| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaagcct | 7 | ||
| MIMAT0034617 | eca-miR-9072 | 2 | ....... | 8 | 100 |
| MIMAT0034471 | eca-miR-8942 | 8 | ....... | 2 | 100 |
| MIMAT0032684 | ssa-miR-736-5p | 7 | ....... | 1 | 100 |
| MIMAT0022445 | ath-miR5643b | 7 | ....... | 1 | 100 |
| MIMAT0022404 | ath-miR5643a | 7 | ....... | 1 | 100 |
| MIMAT0017916 | aly-miR4228 | 1 | ....... | 7 | 100 |
| MIMAT0014864 | mmu-miR-3078-5p | 2 | ....... | 8 | 100 |
| MIMAT0014481 | tgu-miR-2971 | 2 | ....... | 8 | 100 |
| MIMAT0012086 | sme-bantam-c-5p | 8 | ....... | 2 | 100 |
| MIMAT0037138 | ata-miR5200-5p | 1 | _...... | 6 | 85 |
| MIMAT0034506 | eca-miR-8969 | 8 | ......_ | 3 | 85 |
| MIMAT0031541 | ppe-miR477-3p | 3 | _...... | 8 | 85 |
| MIMAT0030267 | bdi-miR7760-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029072 | gga-miR-7459-5p | 6 | ......_ | 1 | 85 |
| MIMAT0028682 | mdo-miR-7337-5p | 1 | _...... | 6 | 85 |
| MIMAT0028116 | hsa-miR-7109-3p | 2 | _...... | 7 | 85 |
| MIMAT0027949 | mmu-miR-7022-3p | 3 | _...... | 8 | 85 |
| MIMAT0027539 | hsa-miR-6819-3p | 1 | _...... | 6 | 85 |
| MIMAT0024401 | ppy-miR-3188 | 8 | _...... | 3 | 85 |
| MIMAT0023010 | bra-miR5713 | 6 | _...... | 1 | 85 |
| MIMAT0022383 | mmu-miR-344h-5p | 7 | _...... | 2 | 85 |
| MIMAT0018915 | smr-miR-282 | 1 | _...... | 6 | 85 |
| MIMAT0018515 | ame-miR-3747a | 8 | _...... | 3 | 85 |
| MIMAT0016593 | cin-miR-4052-5p | 7 | _...... | 2 | 85 |
| MIMAT0016038 | ppy-miR-596 | 1 | _...... | 6 | 85 |
| MIMAT0015070 | hsa-miR-3188 | 8 | _...... | 3 | 85 |
| MIMAT0019212 | hsa-miR-3160-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014923 | mmu-miR-344e-5p | 7 | _...... | 2 | 85 |
| MIMAT0012807 | ptr-miR-596 | 1 | _...... | 6 | 85 |
| MIMAT0013632 | bmo-miR-2760-5p | 8 | _...... | 3 | 85 |
| MIMAT0012168 | sme-miR-753e-5p | 6 | _...... | 1 | 85 |
| MIMAT0011395 | sme-miR-753b-5p | 6 | _...... | 1 | 85 |
| MIMAT0009796 | nve-miR-2037-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007752 | gga-miR-762 | 8 | ......_ | 3 | 85 |
| MIMAT0006775 | cel-miR-1833 | 8 | _...... | 3 | 85 |
| MIMAT0007628 | gga-miR-1728-3p | 6 | _...... | 1 | 85 |
| MIMAT0026756 | oan-miR-1351-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005287 | rno-miR-879-5p | 8 | _...... | 3 | 85 |
| MIMAT0005243 | smo-miR1090 | 3 | ......_ | 8 | 85 |
| MIMAT0005231 | smo-miR1081 | 8 | _...... | 3 | 85 |
| MIMAT0003899 | ppt-miR477a-3p | 3 | _...... | 8 | 85 |
| MIMAT0004842 | mmu-miR-879-5p | 8 | _...... | 3 | 85 |
| MIMAT0004233 | cel-miR-798 | 2 | _...... | 7 | 85 |
| MIMAT0003264 | hsa-miR-596 | 1 | _...... | 6 | 85 |
| MIMAT0001046 | osa-miR168b | 6 | _...... | 1 | 85 |
