| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaagggt | 7 | ||
| MIMAT0033677 | sma-miR-8478-5p | 1 | ....... | 7 | 100 |
| MIMAT0027565 | hsa-miR-6832-3p | 7 | ....... | 1 | 100 |
| MIMAT0022363 | mmu-miR-5618-5p | 8 | ....... | 2 | 100 |
| MIMAT0022183 | cel-miR-5546-5p | 7 | ....... | 1 | 100 |
| MIMAT0015999 | ppy-miR-553 | 2 | ....... | 8 | 100 |
| MIMAT0014065 | rlcv-miR-rL1-20-5p | 2 | ....... | 8 | 100 |
| MIMAT0037020 | ssc-miR-9802-3p | 3 | _...... | 8 | 85 |
| MIMAT0036812 | oha-miR-204-5p | 8 | ......_ | 3 | 85 |
| MIMAT0036689 | oha-miR-130b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0036687 | oha-miR-130a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0036351 | gma-miR9732 | 2 | _...... | 7 | 85 |
| MIMAT0036057 | chi-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0036050 | chi-miR-204-5p | 8 | ......_ | 3 | 85 |
| MIMAT0035298 | gsa-miR-2d-5p | 6 | _...... | 1 | 85 |
| MIMAT0035294 | gsa-miR-278-5p | 3 | _...... | 8 | 85 |
| MIMAT0034989 | efu-miR-9314 | 8 | _...... | 3 | 85 |
| MIMAT0034964 | efu-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0032671 | ssa-miR-724-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032488 | ssa-miR-204-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032330 | ssa-miR-130d-3-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032324 | ssa-miR-130b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0030171 | bdi-miR7722-3p | 2 | _...... | 7 | 85 |
| MIMAT0029883 | mmu-miR-7681-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029847 | mmu-miR-7670-3p | 8 | ......_ | 3 | 85 |
| MIMAT0029522 | ipu-miR-724 | 3 | ......_ | 8 | 85 |
| MIMAT0029459 | ipu-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0028595 | mdo-miR-1643a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026311 | ccr-miR-724 | 3 | ......_ | 8 | 85 |
| MIMAT0027751 | mmu-miR-6925-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027313 | ppe-miR6283 | 3 | ......_ | 8 | 85 |
| MIMAT0024541 | cca-miR6107 | 1 | ......_ | 6 | 85 |
| MIMAT0023844 | cgr-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0023562 | tca-miR-6010-3p | 2 | _...... | 7 | 85 |
| MIMAT0022589 | ola-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0022469 | hsa-miR-5681a | 3 | ......_ | 8 | 85 |
| MIMAT0022030 | aca-miR-5412-5p | 1 | _...... | 6 | 85 |
| MIMAT0021853 | aca-miR-204a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0021066 | gma-miR5039 | 6 | ......_ | 1 | 85 |
| MIMAT0019939 | hsa-miR-4780 | 6 | _...... | 1 | 85 |
| MIMAT0019515 | pma-miR-204-5p | 8 | ......_ | 3 | 85 |
| MIMAT0018170 | mghv-miR-M1-12-5p | 1 | _...... | 6 | 85 |
| MIMAT0016483 | cin-miR-4006f-3p | 6 | _...... | 1 | 85 |
| MIMAT0017889 | rno-miR-3590-5p | 8 | ......_ | 3 | 85 |
| MIMAT0016276 | sja-miR-2c-5p | 6 | _...... | 1 | 85 |
| MIMAT0014570 | tgu-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0014351 | hsv2-miR-H7-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013112 | eca-miR-204b | 8 | ......_ | 3 | 85 |
| MIMAT0012901 | eca-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0013732 | bmo-miR-2780b | 1 | _...... | 6 | 85 |
| MIMAT0013669 | bmo-miR-2780a-5p | 1 | _...... | 6 | 85 |
| MIMAT0012595 | hsv1-miR-H7-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013301 | mtr-miR2598 | 3 | _...... | 8 | 85 |
| MIMAT0012492 | dsi-miR-992-3p | 6 | ......_ | 1 | 85 |
| MIMAT0011174 | pvu-miR2119 | 3 | ......_ | 8 | 85 |
| MIMAT0011168 | mtr-miR2119 | 3 | ......_ | 8 | 85 |
| MIMAT0011167 | gma-miR2119 | 3 | ......_ | 8 | 85 |
| MIMAT0009867 | cfa-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0009263 | bta-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0008071 | ptr-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0006598 | cfa-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0006235 | mml-miR-204-5p | 8 | ......_ | 3 | 85 |
| MIMAT0007430 | gga-miR-1570 | 2 | _...... | 7 | 85 |
| MIMAT0006841 | oan-miR-204-5p | 8 | ......_ | 3 | 85 |
| MIMAT0005080 | ppt-miR902h-3p | 3 | _...... | 8 | 85 |
| MIMAT0004338 | bta-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0004127 | mdo-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0003696 | xtr-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0003752 | dre-miR-724 | 3 | ......_ | 8 | 85 |
| MIMAT0003368 | gga-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0017211 | rno-miR-540-5p | 2 | _...... | 7 | 85 |
| MIMAT0004786 | mmu-miR-540-5p | 2 | _...... | 7 | 85 |
| MIMAT0003102 | tni-miR-204a | 8 | ......_ | 3 | 85 |
| MIMAT0003101 | fru-miR-204a | 8 | ......_ | 3 | 85 |
| MIMAT0002935 | tni-miR-204b | 8 | ......_ | 3 | 85 |
| MIMAT0002549 | mne-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0002548 | ppy-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0002547 | mml-miR-211 | 8 | ......_ | 3 | 85 |
| MIMAT0002540 | ppa-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0002539 | mne-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0002538 | sla-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0002537 | ppy-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0002536 | ggo-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0002535 | ptr-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0002164 | ssc-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0001279 | dre-miR-204-5p | 8 | ......_ | 3 | 85 |
| MIMAT0001156 | gga-miR-204 | 8 | ......_ | 3 | 85 |
| MIMAT0000882 | rno-miR-211-5p | 8 | ......_ | 3 | 85 |
| MIMAT0000877 | rno-miR-204-5p | 8 | ......_ | 3 | 85 |
| MIMAT0000668 | mmu-miR-211-5p | 8 | ......_ | 3 | 85 |
| MIMAT0000576 | rno-miR-336-5p | 8 | _...... | 3 | 85 |
| MIMAT0000268 | hsa-miR-211-5p | 8 | ......_ | 3 | 85 |
| MIMAT0000265 | hsa-miR-204-5p | 8 | ......_ | 3 | 85 |
| MIMAT0000237 | mmu-miR-204-5p | 8 | ......_ | 3 | 85 |
