| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaaggtgg | 8 | ||
| MIMAT0019282 | oar-miR-654-5p | 1 | ........ | 8 | 100 |
| MIMAT0007461 | gga-miR-1596-3p | 1 | ........ | 8 | 100 |
| MIMAT0001570 | mghv-miR-M1-7-5p | 1 | ........ | 8 | 100 |
| MIMAT0031575 | bbe-miR-10b-3p | 2 | _....... | 8 | 87 |
| MIMAT0029823 | mmu-miR-7658-3p | 8 | _....... | 2 | 87 |
| MIMAT0028531 | mdo-miR-7278-3p | 7 | ......._ | 1 | 87 |
| MIMAT0027978 | mmu-miR-7037-5p | 1 | _....... | 7 | 87 |
| MIMAT0027465 | hsa-miR-6782-3p | 7 | ......._ | 1 | 87 |
| MIMAT0019861 | hsa-miR-4735-3p | 1 | ......._ | 7 | 87 |
| MIMAT0019636 | pma-miR-4602 | 8 | ......._ | 2 | 87 |
| MIMAT0019389 | pma-miR-18b-5p | 1 | ......._ | 7 | 87 |
| MIMAT0013765 | bmo-miR-2780d | 1 | ......._ | 7 | 87 |
| MIMAT0013615 | bmo-miR-2755-5p | 2 | _....... | 8 | 87 |
| MIMAT0013421 | mtr-miR2649 | 1 | ......._ | 7 | 87 |
| MIMAT0011686 | ppc-miR-2260 | 2 | _....... | 8 | 87 |
| MIMAT0011636 | crm-miR-66-3p | 8 | ......._ | 2 | 87 |
| MIMAT0035675 | bra-miR9560b-5p | 1 | .c...... | 8 | 87 |
| MIMAT0035673 | bra-miR9560a-5p | 1 | .c...... | 8 | 87 |
| MIMAT0032770 | ath-miR8171 | 1 | .t...... | 8 | 87 |
| MIMAT0030102 | bdi-miR5174b-3p | 8 | ......t. | 1 | 87 |
| MIMAT0030069 | bdi-miR5174e-3p.1 | 8 | ......t. | 1 | 87 |
| MIMAT0022161 | osa-miR5526 | 1 | ......a. | 8 | 87 |
| MIMAT0020238 | egr-miR-87-5p | 8 | .c...... | 1 | 87 |
| MIMAT0020196 | dme-miR-4969-3p | 8 | .c...... | 1 | 87 |
| MIMAT0018672 | tca-miR-3823-5p | 1 | ......c. | 8 | 87 |
| MIMAT0014829 | mmu-miR-3061-3p | 8 | ......a. | 1 | 87 |
| MIMAT0026770 | mdo-miR-1546-3p | 8 | .g...... | 1 | 87 |
| MIMAT0037235 | ata-miR394-3p | 1 | __...... | 6 | 75 |
| MIMAT0036770 | oha-miR-18b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036768 | oha-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036685 | oha-miR-1306-5p | 8 | __...... | 3 | 75 |
| MIMAT0036496 | tch-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0036267 | chi-miR-502b-3p | 8 | __...... | 3 | 75 |
| MIMAT0036017 | chi-miR-18b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036015 | chi-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035939 | chi-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0035785 | tae-miR9670-3p | 1 | __...... | 6 | 75 |
| MIMAT0035587 | dvi-miR-968-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035438 | sly-miR394-3p | 1 | __...... | 6 | 75 |
| MIMAT0035091 | efu-miR-9186o | 2 | __...... | 7 | 75 |
| MIMAT0034997 | efu-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0034959 | efu-miR-9186q | 2 | __...... | 7 | 75 |
| MIMAT0034815 | efu-miR-9222 | 6 | _......_ | 1 | 75 |
| MIMAT0034551 | eca-miR-3200 | 6 | _......_ | 1 | 75 |
| MIMAT0034046 | gra-miR8675a | 1 | _......_ | 6 | 75 |
| MIMAT0033650 | sma-miR-8465-3p | 3 | _......_ | 8 | 75 |
| MIMAT0033462 | str-miR-8394-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033104 | ppc-miR-8295-3p | 6 | ......__ | 1 | 75 |
| MIMAT0033056 | ppc-miR-8278-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032434 | ssa-miR-18b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032432 | ssa-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031175 | hsa-miR-548ba | 1 | ......__ | 6 | 75 |
| MIMAT0030512 | prd-miR-7878-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032186 | pmi-miR-2011-3p | 3 | _......_ | 8 | 75 |
| MIMAT0029443 | ipu-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0028937 | mdo-miR-7398i-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028929 | mdo-miR-7398j-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028818 | mdo-miR-7381-5p | 1 | _......_ | 6 | 75 |
| MIMAT0028777 | mdo-miR-7372-3p | 7 | __...... | 2 | 75 |
| MIMAT0028766 | mdo-miR-18b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031024 | mdo-miR-1545b-3-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028751 | mdo-miR-1545b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028322 | mml-miR-548i-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028240 | mml-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0028210 | dre-miR-1306 | 6 | __...... | 1 | 75 |
| MIMAT0026248 | ccr-miR-18c | 2 | _......_ | 7 | 75 |
| MIMAT0026247 | ccr-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0026246 | ccr-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0027943 | mmu-miR-7019-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027890 | mmu-miR-6994-5p | 3 | ......__ | 8 | 75 |
| MIMAT0027630 | hsa-miR-6865-5p | 2 | __...... | 7 | 75 |
| MIMAT0027530 | hsa-miR-6815-5p | 2 | __...... | 7 | 75 |
| MIMAT0027504 | hsa-miR-6802-5p | 3 | __...... | 8 | 75 |
| MIMAT0027438 | hsa-miR-6769a-5p | 1 | __...... | 6 | 75 |
| MIMAT0027419 | hsa-miR-6759-3p | 8 | ......__ | 3 | 75 |
| MIMAT0027361 | hsa-miR-6730-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025017 | hme-miR-6310-3p | 3 | __...... | 8 | 75 |
| MIMAT0024851 | rno-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0024618 | hsa-miR-6134 | 3 | __...... | 8 | 75 |
| MIMAT0024609 | ptr-miR-6134 | 3 | __...... | 8 | 75 |
| MIMAT0024323 | mml-miR-3200-3p | 6 | _......_ | 1 | 75 |
| MIMAT0024309 | ggo-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0024070 | ptr-miR-3165 | 1 | __...... | 6 | 75 |
| MIMAT0024036 | ptr-miR-3200 | 6 | _......_ | 1 | 75 |
| MIMAT0023817 | cgr-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0023752 | cgr-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0023443 | hco-miR-5944 | 3 | ......__ | 8 | 75 |
| MIMAT0023382 | hco-miR-5913 | 3 | ......__ | 8 | 75 |
| MIMAT0022590 | ola-miR-1306 | 6 | __...... | 1 | 75 |
| MIMAT0022532 | ola-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0023092 | tur-miR-5735-5p | 6 | ......__ | 1 | 75 |
| MIMAT0023025 | bra-miR5726 | 2 | ......__ | 7 | 75 |
| MIMAT0022434 | ath-miR5660 | 2 | __...... | 7 | 75 |
| MIMAT0021819 | aca-miR-18b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0021817 | aca-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020585 | ssc-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0020051 | sko-miR-4835-5p | 1 | __...... | 6 | 75 |
| MIMAT0019908 | hsa-miR-4761-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019387 | pma-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019359 | hsa-miR-3974 | 1 | ......__ | 6 | 75 |
| MIMAT0019259 | oar-miR-323a-5p | 1 | __...... | 6 | 75 |
| MIMAT0018989 | hsa-miR-548ai | 1 | ......__ | 6 | 75 |
| MIMAT0018969 | hsa-miR-548ag | 1 | ......__ | 6 | 75 |
| MIMAT0018336 | gma-miR394b-3p | 1 | __...... | 6 | 75 |
| MIMAT0018272 | gma-miR4387b | 1 | _......_ | 6 | 75 |
| MIMAT0018540 | ame-miR-3766 | 2 | __...... | 7 | 75 |
| MIMAT0016771 | cin-miR-4163-3p | 8 | __...... | 3 | 75 |
| MIMAT0016614 | cin-miR-4063-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016585 | cin-miR-4048-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016344 | ahy-miR3518 | 8 | ......__ | 3 | 75 |
| MIMAT0016274 | sja-miR-3479-5p | 1 | __...... | 6 | 75 |
| MIMAT0016159 | ppy-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0015825 | ppy-miR-323-5p | 1 | __...... | 6 | 75 |
| MIMAT0015731 | ppy-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0017546 | aly-miR394b-3p | 1 | __...... | 6 | 75 |
| MIMAT0017544 | aly-miR394a-3p | 1 | __...... | 6 | 75 |
| MIMAT0015436 | bmo-miR-3253 | 7 | ......__ | 2 | 75 |
| MIMAT0015413 | bmo-miR-3231 | 7 | _......_ | 2 | 75 |
| MIMAT0015403 | bmo-miR-3223-5p | 7 | ......__ | 2 | 75 |
| MIMAT0015085 | hsa-miR-3200-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015039 | hsa-miR-3165 | 1 | __...... | 6 | 75 |
| MIMAT0014607 | tgu-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0014587 | tgu-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0013937 | ssc-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0013200 | eca-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0013131 | eca-miR-323-5p | 1 | __...... | 6 | 75 |
| MIMAT0013085 | eca-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0026950 | mml-miR-524-3p | 2 | _......_ | 7 | 75 |
| MIMAT0012330 | dps-miR-2538-5p | 2 | __...... | 7 | 75 |
| MIMAT0012246 | dps-miR-968-3p | 7 | ......__ | 2 | 75 |
| MIMAT0009974 | bta-miR-1306 | 6 | __...... | 1 | 75 |
| MIMAT0009832 | cfa-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0009831 | cfa-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0017350 | mmu-miR-1968-3p | 7 | __...... | 2 | 75 |
| MIMAT0019136 | mmu-miR-1306-5p | 8 | __...... | 3 | 75 |
| MIMAT0008054 | ptr-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0006661 | cfa-miR-1306 | 6 | __...... | 1 | 75 |
| MIMAT0006422 | mml-miR-553 | 3 | ......__ | 8 | 75 |
| MIMAT0006264 | mml-miR-323a-5p | 1 | __...... | 6 | 75 |
| MIMAT0006163 | mml-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0007639 | gga-miR-1736-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006059 | odi-miR-1499 | 8 | _......_ | 3 | 75 |
| MIMAT0006039 | odi-miR-1486 | 3 | __...... | 8 | 75 |
| MIMAT0006022 | odi-miR-1471 | 7 | _......_ | 2 | 75 |
| MIMAT0006021 | odi-miR-1470 | 8 | _......_ | 3 | 75 |
| MIMAT0026763 | gga-miR-1306-5p | 7 | __...... | 2 | 75 |
| MIMAT0007297 | oan-miR-1421ag-5p | 1 | __...... | 6 | 75 |
| MIMAT0007191 | oan-miR-1393 | 7 | _......_ | 2 | 75 |
| MIMAT0007088 | oan-miR-1421u-5p | 1 | __...... | 6 | 75 |
| MIMAT0007084 | oan-miR-1421s-5p | 1 | __...... | 6 | 75 |
| MIMAT0007080 | oan-miR-1421q-5p | 1 | __...... | 6 | 75 |
| MIMAT0007074 | oan-miR-1421n-5p | 1 | __...... | 6 | 75 |
| MIMAT0006851 | oan-miR-18-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022726 | hsa-miR-1306-5p | 6 | __...... | 1 | 75 |
| MIMAT0005917 | hsa-miR-548m | 2 | ......__ | 7 | 75 |
| MIMAT0005571 | mml-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0005569 | ptr-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0005376 | cre-miR1142 | 1 | _......_ | 6 | 75 |
| MIMAT0017310 | rno-miR-471-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020865 | dme-miR-968-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004386 | cre-miR905-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004858 | mmu-miR-18b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004167 | mdo-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012088 | sme-let-7c-3p | 6 | ......__ | 1 | 75 |
| MIMAT0003706 | xtr-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0003652 | xtr-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003526 | bta-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0003517 | bta-miR-18b | 2 | _......_ | 7 | 75 |
| MIMAT0017231 | mmu-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0005459 | hsa-miR-1224-3p | 8 | __...... | 3 | 75 |
| MIMAT0003437 | rlcv-miR-rL1-8-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004817 | ebv-miR-BART10-5p | 7 | __...... | 2 | 75 |
| MIMAT0003413 | ebv-miR-BART5-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022707 | hsa-miR-570-5p | 1 | ......__ | 6 | 75 |
| MIMAT0002919 | tni-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0002918 | fru-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0002723 | mne-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0002716 | lla-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0002709 | sla-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0002702 | mml-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0002695 | ptr-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0002688 | ppy-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0002681 | ppa-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0002674 | age-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0002667 | lca-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0002660 | ggo-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0002161 | ssc-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0017195 | mmu-miR-471-3p | 3 | ......__ | 8 | 75 |
| MIMAT0001781 | dre-miR-18c | 2 | _......_ | 7 | 75 |
| MIMAT0001780 | dre-miR-18b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001779 | dre-miR-18a | 2 | _......_ | 7 | 75 |
| MIMAT0015163 | zma-miR394b-3p | 1 | __...... | 6 | 75 |
| MIMAT0015162 | zma-miR394a-3p | 1 | __...... | 6 | 75 |
| MIMAT0001412 | hsa-miR-18b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001349 | xla-miR-18 | 2 | _......_ | 7 | 75 |
| MIMAT0001141 | gga-miR-18b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001113 | gga-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0031907 | ath-miR394b-3p | 1 | __...... | 6 | 75 |
| MIMAT0017108 | rno-miR-92a-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0000787 | rno-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004696 | hsa-miR-323a-5p | 1 | __...... | 6 | 75 |
| MIMAT0017076 | mmu-miR-363-5p | 2 | __...... | 7 | 75 |
| MIMAT0004638 | mmu-miR-323-5p | 1 | __...... | 6 | 75 |
| MIMAT0004637 | rno-miR-323-5p | 1 | __...... | 6 | 75 |
| MIMAT0004635 | mmu-miR-92a-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0000528 | mmu-miR-18a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015112 | cel-miR-229-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000072 | hsa-miR-18a-5p | 2 | _......_ | 7 | 75 |
