| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaatgct | 7 | ||
| MIMAT0033458 | str-miR-8393-5p | 7 | ....... | 1 | 100 |
| MIMAT0032739 | ssa-miR-734-3p | 2 | ....... | 8 | 100 |
| MIMAT0030014 | mtr-miR2592br-3p | 1 | ....... | 7 | 100 |
| MIMAT0030012 | mtr-miR2592bq-3p | 1 | ....... | 7 | 100 |
| MIMAT0030009 | mtr-miR2592bp-5p | 1 | ....... | 7 | 100 |
| MIMAT0030008 | mtr-miR2592bo-3p | 1 | ....... | 7 | 100 |
| MIMAT0026318 | ccr-miR-734 | 2 | ....... | 8 | 100 |
| MIMAT0021171 | mtr-miR2592ao | 1 | ....... | 7 | 100 |
| MIMAT0021170 | mtr-miR2592an | 1 | ....... | 7 | 100 |
| MIMAT0019589 | pma-miR-4557 | 1 | ....... | 7 | 100 |
| MIMAT0013355 | mtr-miR2592n | 1 | ....... | 7 | 100 |
| MIMAT0013354 | mtr-miR2592m | 1 | ....... | 7 | 100 |
| MIMAT0013353 | mtr-miR2592l | 1 | ....... | 7 | 100 |
| MIMAT0013352 | mtr-miR2592k | 1 | ....... | 7 | 100 |
| MIMAT0013351 | mtr-miR2592h | 1 | ....... | 7 | 100 |
| MIMAT0013350 | mtr-miR2592g | 1 | ....... | 7 | 100 |
| MIMAT0013349 | mtr-miR2592a.2-3p | 1 | ....... | 7 | 100 |
| MIMAT0013279 | mtr-miR2592s-3p | 1 | ....... | 7 | 100 |
| MIMAT0013278 | mtr-miR2592r | 1 | ....... | 7 | 100 |
| MIMAT0013277 | mtr-miR2592q-3p | 1 | ....... | 7 | 100 |
| MIMAT0013276 | mtr-miR2592p | 1 | ....... | 7 | 100 |
| MIMAT0013275 | mtr-miR2592o-3p | 1 | ....... | 7 | 100 |
| MIMAT0013274 | mtr-miR2592j | 1 | ....... | 7 | 100 |
| MIMAT0013273 | mtr-miR2592i | 1 | ....... | 7 | 100 |
| MIMAT0013272 | mtr-miR2592f | 1 | ....... | 7 | 100 |
| MIMAT0013271 | mtr-miR2592e-3p | 1 | ....... | 7 | 100 |
| MIMAT0013270 | mtr-miR2592d-3p | 1 | ....... | 7 | 100 |
| MIMAT0013269 | mtr-miR2592c | 1 | ....... | 7 | 100 |
| MIMAT0013268 | mtr-miR2592b-3p | 1 | ....... | 7 | 100 |
| MIMAT0012090 | sme-miR-1a-5p | 7 | ....... | 1 | 100 |
| MIMAT0003426 | ebv-miR-BART14-3p | 2 | ....... | 8 | 100 |
| MIMAT0036555 | tch-miR-9771i | 1 | ......_ | 6 | 85 |
| MIMAT0036472 | tch-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0035988 | chi-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0035904 | chi-miR-105b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035903 | chi-miR-105a | 3 | ......_ | 8 | 85 |
| MIMAT0035445 | sly-miR5302b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0035367 | nve-miR-9412 | 3 | _...... | 8 | 85 |
| MIMAT0035061 | efu-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0034141 | gra-miR172b | 8 | _...... | 3 | 85 |
| MIMAT0033201 | ppc-miR-8328-3p | 2 | _...... | 7 | 85 |
| MIMAT0032392 | ssa-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0030428 | hsa-miR-7853-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030409 | rno-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0029742 | cbn-miR-357 | 1 | ......_ | 6 | 85 |
| MIMAT0029429 | ipu-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0028857 | mdo-miR-7386f-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028760 | mdo-miR-7369-5p | 2 | _...... | 7 | 85 |
| MIMAT0028693 | mdo-miR-7341-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028319 | mml-miR-7183-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028224 | hsa-miR-7157-5p | 8 | _...... | 3 | 85 |
| MIMAT0026231 | ccr-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0024329 | mml-miR-1179 | 7 | _...... | 2 | 85 |
| MIMAT0024221 | ggo-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0024218 | ggo-miR-1179 | 7 | _...... | 2 | 85 |
| MIMAT0023788 | cgr-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0022042 | aca-miR-5422 | 8 | _...... | 3 | 85 |
| MIMAT0021788 | aca-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0020768 | sly-miR5304 | 3 | _...... | 8 | 85 |
| MIMAT0021349 | mtr-miR5288 | 7 | _...... | 2 | 85 |
| MIMAT0021331 | mtr-miR2600e | 7 | _...... | 2 | 85 |
| MIMAT0021330 | mtr-miR2600d | 7 | _...... | 2 | 85 |
| MIMAT0021329 | mtr-miR2600c | 7 | _...... | 2 | 85 |
| MIMAT0021328 | mtr-miR2600b | 7 | _...... | 2 | 85 |
| MIMAT0021290 | mtr-miR5267o | 8 | ......_ | 3 | 85 |
| MIMAT0021289 | mtr-miR5267n | 8 | ......_ | 3 | 85 |
| MIMAT0021288 | mtr-miR5267m | 8 | ......_ | 3 | 85 |
| MIMAT0021287 | mtr-miR5267l | 8 | ......_ | 3 | 85 |
| MIMAT0021286 | mtr-miR5267k | 8 | ......_ | 3 | 85 |
| MIMAT0021285 | mtr-miR5267j | 8 | ......_ | 3 | 85 |
| MIMAT0021284 | mtr-miR5267i | 8 | ......_ | 3 | 85 |
| MIMAT0021283 | mtr-miR5267h | 8 | ......_ | 3 | 85 |
| MIMAT0021282 | mtr-miR5267g | 8 | ......_ | 3 | 85 |
| MIMAT0021281 | mtr-miR5267f | 8 | ......_ | 3 | 85 |
| MIMAT0021280 | mtr-miR5267e | 8 | ......_ | 3 | 85 |
| MIMAT0021279 | mtr-miR5267d | 8 | ......_ | 3 | 85 |
| MIMAT0021278 | mtr-miR5267c | 8 | ......_ | 3 | 85 |
| MIMAT0021277 | mtr-miR5267b | 8 | ......_ | 3 | 85 |
| MIMAT0021276 | mtr-miR5267a | 8 | ......_ | 3 | 85 |
| MIMAT0020162 | dme-miR-4950-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019990 | cel-miR-4807 | 1 | ......_ | 6 | 85 |
| MIMAT0019599 | pma-miR-4567 | 2 | _...... | 7 | 85 |
| MIMAT0019485 | pma-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0018753 | tca-miR-3849-3p | 6 | _...... | 1 | 85 |
| MIMAT0022959 | ssc-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0016862 | hsa-miR-4310 | 8 | _...... | 3 | 85 |
| MIMAT0016806 | cin-miR-4188-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016613 | cin-miR-4062-3p | 1 | _...... | 6 | 85 |
| MIMAT0016607 | cin-miR-4059-3p | 2 | _...... | 7 | 85 |
| MIMAT0016513 | cin-miR-4012-3p | 6 | _...... | 1 | 85 |
| MIMAT0016144 | ppy-miR-1179 | 7 | _...... | 2 | 85 |
| MIMAT0015777 | ppy-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0014612 | tgu-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0013193 | eca-miR-105 | 3 | ......_ | 8 | 85 |
| MIMAT0013182 | eca-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0012887 | eca-miR-1179 | 7 | _...... | 2 | 85 |
| MIMAT0011315 | dre-miR-2194 | 3 | _...... | 8 | 85 |
| MIMAT0011279 | sme-miR-2177-3p | 1 | ......_ | 6 | 85 |
| MIMAT0009957 | bta-miR-1179 | 7 | _...... | 2 | 85 |
| MIMAT0010198 | cfa-miR-105b | 3 | ......_ | 8 | 85 |
| MIMAT0009879 | cfa-miR-105a | 3 | ......_ | 8 | 85 |
| MIMAT0017348 | mmu-miR-1955-3p | 7 | _...... | 2 | 85 |
| MIMAT0009241 | bta-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0009217 | bta-miR-105a | 3 | ......_ | 8 | 85 |
| MIMAT0009216 | bta-miR-105b | 3 | ......_ | 8 | 85 |
| MIMAT0008048 | ptr-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0007948 | ptr-miR-1179 | 7 | _...... | 2 | 85 |
| MIMAT0007773 | osa-miR1853-5p | 6 | _...... | 1 | 85 |
| MIMAT0006671 | cfa-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0006216 | mml-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0026784 | gga-miR-1775-5p | 3 | _...... | 8 | 85 |
| MIMAT0006131 | csa-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0006105 | cin-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0006988 | oan-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0005824 | hsa-miR-1179 | 7 | _...... | 2 | 85 |
| MIMAT0005134 | ppt-miR1031b | 3 | _...... | 8 | 85 |
| MIMAT0005133 | ppt-miR1031a | 3 | _...... | 8 | 85 |
| MIMAT0003924 | mdv1-miR-M4-5p | 3 | _...... | 8 | 85 |
| MIMAT0003608 | xtr-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0003765 | dre-miR-734 | 3 | ......_ | 8 | 85 |
| MIMAT0002457 | mne-miR-105 | 3 | ......_ | 8 | 85 |
| MIMAT0002456 | lla-miR-105 | 3 | ......_ | 8 | 85 |
| MIMAT0002455 | sla-miR-105 | 3 | ......_ | 8 | 85 |
| MIMAT0002454 | mml-miR-105-5p | 3 | ......_ | 8 | 85 |
| MIMAT0002453 | ptr-miR-105 | 3 | ......_ | 8 | 85 |
| MIMAT0002452 | ppa-miR-105 | 3 | ......_ | 8 | 85 |
| MIMAT0002451 | ggo-miR-105 | 3 | ......_ | 8 | 85 |
| MIMAT0002450 | ppy-miR-105 | 3 | ......_ | 8 | 85 |
| MIMAT0002181 | kshv-miR-K12-11-3p | 3 | _...... | 8 | 85 |
| MIMAT0002117 | ssc-miR-105-2 | 3 | ......_ | 8 | 85 |
| MIMAT0002116 | ssc-miR-105-1 | 3 | ......_ | 8 | 85 |
| MIMAT0001851 | dre-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0001106 | gga-miR-155 | 3 | _...... | 8 | 85 |
| MIMAT0020344 | cel-miR-392-5p | 6 | _...... | 1 | 85 |
| MIMAT0031896 | cel-lsy-6-5p | 1 | ......_ | 6 | 85 |
| MIMAT0000699 | cel-miR-357-3p | 1 | ......_ | 6 | 85 |
| MIMAT0000646 | hsa-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0000165 | mmu-miR-155-5p | 3 | _...... | 8 | 85 |
| MIMAT0000102 | hsa-miR-105-5p | 3 | ......_ | 8 | 85 |
