| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaattctg | 8 | ||
| MIMAT0028538 | mdo-miR-7282-5p | 1 | ........ | 8 | 100 |
| MIMAT0019085 | rlcv-miR-rL1-2-5p | 1 | ........ | 8 | 100 |
| MIMAT0000996 | ebv-miR-BHRF1-2-5p | 1 | ........ | 8 | 100 |
| MIMAT0031597 | bbe-miR-182b-3p | 7 | _....... | 1 | 87 |
| MIMAT0026359 | bma-miR-5860 | 7 | ......._ | 1 | 87 |
| MIMAT0020719 | bdi-miR5175a | 8 | ......._ | 2 | 87 |
| MIMAT0020218 | dme-miR-4983-3p | 2 | ......._ | 8 | 87 |
| MIMAT0020081 | bfl-miR-182b-3p | 7 | _....... | 1 | 87 |
| MIMAT0019936 | hsa-miR-4778-5p | 1 | _....... | 7 | 87 |
| MIMAT0016404 | cin-miR-96-3p | 1 | _....... | 7 | 87 |
| MIMAT0015445 | bmo-miR-3261 | 8 | ......._ | 2 | 87 |
| MIMAT0017337 | gma-miR482a-5p | 7 | ......._ | 1 | 87 |
| MIMAT0006009 | ptc-miR1447 | 7 | _....... | 1 | 87 |
| MIMAT0033794 | pxy-miR-10-3p | 1 | ......g. | 8 | 87 |
| MIMAT0022130 | osa-miR5497 | 8 | .t...... | 1 | 87 |
| MIMAT0011617 | crm-miR-239a-3p | 8 | .g...... | 1 | 87 |
| MIMAT0010145 | lmi-miR-10-3p | 1 | ......g. | 8 | 87 |
| MIMAT0032061 | dvi-miR-283-3p | 8 | ......c. | 1 | 87 |
| MIMAT0019127 | tca-miR-283-3p | 8 | .t...... | 1 | 87 |
| MIMAT0020810 | dme-miR-283-3p | 8 | ......c. | 1 | 87 |
| MIMAT0037257 | ata-miR9674b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0037194 | ata-miR9674c-5p | 7 | ......__ | 2 | 75 |
| MIMAT0037083 | ssc-miR-219b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0037003 | ssc-miR-9786-3p | 6 | _......_ | 1 | 75 |
| MIMAT0037003 | ssc-miR-9786-3p | 3 | _......_ | 8 | 75 |
| MIMAT0036842 | oha-miR-219-1-3p | 7 | _......_ | 2 | 75 |
| MIMAT0036663 | oha-miR-10b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036661 | oha-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036365 | gma-miR9745 | 6 | _......_ | 1 | 75 |
| MIMAT0036266 | chi-miR-502b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035912 | chi-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035554 | dvi-miR-1006-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035502 | bdi-miR9493 | 7 | _......_ | 2 | 75 |
| MIMAT0035279 | gsa-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033838 | atr-miR8562c | 7 | __...... | 2 | 75 |
| MIMAT0033697 | pxy-miR-8489a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0033647 | sma-miR-8464-5p | 1 | __...... | 6 | 75 |
| MIMAT0033408 | str-miR-8378-5p | 2 | __...... | 7 | 75 |
| MIMAT0033287 | ppc-miR-84f-3p | 1 | __...... | 6 | 75 |
| MIMAT0032529 | ssa-miR-219b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032527 | ssa-miR-219a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032300 | ssa-miR-10d-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032294 | ssa-miR-10a-2-3p | 2 | ......__ | 7 | 75 |
| MIMAT0032293 | ssa-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031825 | cpa-miR8134 | 8 | _......_ | 3 | 75 |
| MIMAT0031599 | bbe-miR-182d-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031595 | bbe-miR-182a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0031573 | bbe-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031214 | stu-miR8033-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030918 | stu-miR7990b | 6 | ......__ | 1 | 75 |
| MIMAT0030716 | prd-miR-7932-5p | 6 | ......__ | 1 | 75 |
| MIMAT0029893 | mmu-miR-219c-3p | 8 | _......_ | 3 | 75 |
| MIMAT0029807 | mmu-miR-219b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0029474 | ipu-miR-219a | 6 | _......_ | 1 | 75 |
| MIMAT0028897 | mdo-miR-7398e-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028401 | mmu-miR-7216-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025753 | gga-miR-3524b-3p | 8 | __...... | 3 | 75 |
| MIMAT0025667 | gga-miR-6580-5p | 6 | _......_ | 1 | 75 |
| MIMAT0025185 | ptc-miR6459a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025024 | sma-miR-10-3p | 1 | ......__ | 6 | 75 |
| MIMAT0024449 | mse-miR-10a | 2 | ......__ | 7 | 75 |
| MIMAT0023736 | cgr-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0023578 | tca-miR-6018-3p | 7 | _......_ | 2 | 75 |
| MIMAT0023346 | hco-miR-5900 | 1 | _......_ | 6 | 75 |
| MIMAT0022257 | hsa-miR-5571-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022147 | osa-miR2275c | 6 | _......_ | 1 | 75 |
| MIMAT0021885 | aca-miR-219-1-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021722 | aca-miR-10c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021718 | aca-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021612 | gma-miR5038b | 8 | _......_ | 3 | 75 |
| MIMAT0021583 | asu-miR-5360-3p | 1 | ......__ | 6 | 75 |
| MIMAT0021226 | mtr-miR5236e | 7 | ......__ | 2 | 75 |
| MIMAT0021225 | mtr-miR5236d | 7 | ......__ | 2 | 75 |
| MIMAT0021224 | mtr-miR5236c | 7 | ......__ | 2 | 75 |
| MIMAT0021223 | mtr-miR5236b | 7 | ......__ | 2 | 75 |
| MIMAT0021222 | mtr-miR5236a | 7 | ......__ | 2 | 75 |
| MIMAT0020571 | bdi-miR5064 | 7 | ......__ | 2 | 75 |
| MIMAT0021063 | gma-miR5038a | 8 | _......_ | 3 | 75 |
| MIMAT0020220 | dme-miR-4984-3p | 1 | _......_ | 6 | 75 |
| MIMAT0020484 | bfl-miR-182d | 7 | _......_ | 2 | 75 |
| MIMAT0020075 | spu-miR-4852 | 1 | _......_ | 6 | 75 |
| MIMAT0019907 | hsa-miR-4760-3p | 1 | ......__ | 6 | 75 |
| MIMAT0019748 | hsa-miR-219b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019299 | oar-miR-544-3p | 1 | __...... | 6 | 75 |
| MIMAT0018648 | tca-miR-3813-5p | 2 | __...... | 7 | 75 |
| MIMAT0017940 | aly-miR4249 | 7 | ......__ | 2 | 75 |
| MIMAT0016654 | cin-miR-4082-3p | 1 | __...... | 6 | 75 |
| MIMAT0016462 | cin-miR-4003a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017810 | rno-miR-3551-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016374 | gga-miR-3524a | 6 | __...... | 1 | 75 |
| MIMAT0016254 | sja-miR-10-3p | 1 | ......__ | 6 | 75 |
| MIMAT0015994 | ppy-miR-544 | 1 | __...... | 6 | 75 |
| MIMAT0015633 | bmo-miR-3425 | 8 | ......__ | 3 | 75 |
| MIMAT0014784 | api-miR-3045a | 6 | __...... | 1 | 75 |
| MIMAT0014782 | api-miR-3044 | 3 | _......_ | 8 | 75 |
| MIMAT0016971 | cqu-miR-2941-2-5p | 7 | ......__ | 2 | 75 |
| MIMAT0014405 | cqu-miR-10-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022954 | ssc-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0013170 | eca-miR-544 | 1 | __...... | 6 | 75 |
| MIMAT0013118 | eca-miR-544b | 1 | __...... | 6 | 75 |
| MIMAT0012831 | rno-miR-544-3p | 1 | __...... | 6 | 75 |
| MIMAT0012624 | bmo-miR-2745 | 2 | ......__ | 7 | 75 |
| MIMAT0012444 | dsi-miR-1006-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012350 | dps-miR-2545a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0012252 | dps-miR-1006-3p | 2 | ......__ | 7 | 75 |
| MIMAT0011835 | bta-miR-2315 | 8 | __...... | 3 | 75 |
| MIMAT0011224 | sme-miR-2148-5p | 3 | ......__ | 8 | 75 |
| MIMAT0010120 | ame-miR-1006 | 2 | ......__ | 7 | 75 |
| MIMAT0009910 | cfa-miR-544 | 1 | __...... | 6 | 75 |
| MIMAT0009467 | bfl-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0009346 | bta-miR-544a | 1 | __...... | 6 | 75 |
| MIMAT0009345 | bta-miR-544b | 1 | __...... | 6 | 75 |
| MIMAT0012547 | bta-miR-219-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032083 | dvi-miR-10-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019101 | tca-miR-10-3p | 2 | ......__ | 7 | 75 |
| MIMAT0008216 | ptr-miR-544 | 1 | __...... | 6 | 75 |
| MIMAT0009194 | ptr-miR-219-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009212 | osa-miR1866-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006729 | cfa-miR-219-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006408 | mml-miR-544 | 1 | __...... | 6 | 75 |
| MIMAT0006246 | mml-miR-219-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026797 | mml-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0007732 | gga-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0007725 | gga-miR-1807 | 7 | __...... | 2 | 75 |
| MIMAT0007708 | gga-miR-1794 | 8 | __...... | 3 | 75 |
| MIMAT0007486 | gga-miR-1619 | 6 | _......_ | 1 | 75 |
| MIMAT0007123 | oan-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0006900 | oan-miR-219-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005190 | ppt-miR1064-5p | 2 | __...... | 7 | 75 |
| MIMAT0005105 | ppt-miR1023b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005103 | ppt-miR1023a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0005027 | dme-miR-1014-3p | 2 | ......__ | 7 | 75 |
| MIMAT0005019 | dme-miR-1006-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004941 | mmu-miR-544-3p | 1 | __...... | 6 | 75 |
| MIMAT0004313 | ath-miR865-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026681 | mdo-miR-219-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026648 | mdo-miR-10a-3p | 1 | ......__ | 6 | 75 |
| MIMAT0012118 | sme-miR-219-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015229 | bmo-miR-263b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0015226 | bmo-miR-10-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003164 | hsa-miR-544a | 1 | __...... | 6 | 75 |
| MIMAT0031935 | dre-miR-10c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0003391 | dre-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0005446 | rno-miR-219a-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004709 | rno-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0022841 | mmu-miR-219a-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004675 | hsa-miR-219a-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004659 | mmu-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004555 | hsa-miR-10a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0012531 | dme-miR-10-3p | 2 | ......__ | 7 | 75 |
| MIMAT0020315 | cel-miR-66-3p | 1 | ......__ | 6 | 75 |
