| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aacccttc | 8 | ||
| MIMAT0033677 | sma-miR-8478-5p | 8 | ......._ | 2 | 87 |
| MIMAT0030171 | bdi-miR7722-3p | 7 | _....... | 1 | 87 |
| MIMAT0007430 | gga-miR-1570 | 7 | _....... | 1 | 87 |
| MIMAT0005080 | ppt-miR902h-3p | 8 | _....... | 2 | 87 |
| MIMAT0019398 | pma-miR-22a-5p | 1 | .g...... | 8 | 87 |
| MIMAT0037192 | ata-miR528-5p | 8 | __...... | 3 | 75 |
| MIMAT0037020 | ssc-miR-9802-3p | 8 | _......_ | 3 | 75 |
| MIMAT0036504 | tch-miR-296-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036390 | gma-miR9757 | 2 | ......__ | 7 | 75 |
| MIMAT0036351 | gma-miR9732 | 7 | _......_ | 2 | 75 |
| MIMAT0036111 | chi-miR-296-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035714 | mmu-miR-3154 | 8 | __...... | 3 | 75 |
| MIMAT0035308 | gsa-miR-10b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0035298 | gsa-miR-2d-5p | 1 | _......_ | 6 | 75 |
| MIMAT0035294 | gsa-miR-278-5p | 8 | _......_ | 3 | 75 |
| MIMAT0034989 | efu-miR-9314 | 3 | _......_ | 8 | 75 |
| MIMAT0034685 | eca-miR-9134 | 8 | __...... | 3 | 75 |
| MIMAT0034643 | eca-miR-9097 | 8 | __...... | 3 | 75 |
| MIMAT0033869 | atr-miR8584 | 3 | ......__ | 8 | 75 |
| MIMAT0032918 | ppc-miR-8233-5p | 6 | ......__ | 1 | 75 |
| MIMAT0032677 | ssa-miR-729-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032635 | ssa-miR-430c-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032550 | ssa-miR-23a-4-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031574 | bbe-miR-10b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031557 | ppe-miR8130-3p | 1 | __...... | 6 | 75 |
| MIMAT0030602 | prd-miR-235-5p | 8 | __...... | 3 | 75 |
| MIMAT0032193 | lva-miR-10-5p | 1 | ......__ | 6 | 75 |
| MIMAT0032143 | pmi-miR-10-5p | 1 | ......__ | 6 | 75 |
| MIMAT0029310 | hsa-miR-7515 | 7 | __...... | 2 | 75 |
| MIMAT0029272 | mes-miR395e | 8 | __...... | 3 | 75 |
| MIMAT0029053 | gga-miR-7449-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028933 | mdo-miR-7398h-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028526 | mdo-miR-7276-5p | 1 | __...... | 6 | 75 |
| MIMAT0027967 | mmu-miR-7031-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027938 | mmu-miR-7017-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027673 | hsa-miR-6886-3p | 3 | __...... | 8 | 75 |
| MIMAT0027628 | hsa-miR-6864-5p | 8 | __...... | 3 | 75 |
| MIMAT0027565 | hsa-miR-6832-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027546 | hsa-miR-6823-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027413 | hsa-miR-6756-3p | 3 | __...... | 8 | 75 |
| MIMAT0027370 | hsa-miR-6734-3p | 1 | __...... | 6 | 75 |
| MIMAT0027366 | hsa-miR-6732-3p | 2 | ......__ | 7 | 75 |
| MIMAT0025529 | bta-miR-3154 | 8 | __...... | 3 | 75 |
| MIMAT0025023 | sma-miR-10-5p | 1 | ......__ | 6 | 75 |
| MIMAT0024627 | mml-miR-3154 | 8 | __...... | 3 | 75 |
| MIMAT0024608 | ptr-miR-3154 | 8 | __...... | 3 | 75 |
| MIMAT0024402 | ppy-miR-3154 | 8 | __...... | 3 | 75 |
| MIMAT0024290 | ggo-miR-296 | 6 | ......__ | 1 | 75 |
| MIMAT0023991 | cgr-miR-652-5p | 2 | ......__ | 7 | 75 |
| MIMAT0023880 | cgr-miR-296 | 7 | ......__ | 2 | 75 |
| MIMAT0023590 | sly-miR6022 | 8 | __...... | 3 | 75 |
| MIMAT0023589 | stu-miR6022 | 8 | __...... | 3 | 75 |
| MIMAT0023562 | tca-miR-6010-3p | 7 | _......_ | 2 | 75 |
| MIMAT0023361 | hco-miR-5907 | 3 | ......__ | 8 | 75 |
| MIMAT0023153 | mtr-miR5037c | 1 | ......__ | 6 | 75 |
| MIMAT0023151 | mtr-miR5037b | 1 | ......__ | 6 | 75 |
| MIMAT0023150 | mtr-miR5037a | 1 | ......__ | 6 | 75 |
| MIMAT0022363 | mmu-miR-5618-5p | 2 | _......_ | 7 | 75 |
| MIMAT0022183 | cel-miR-5546-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022030 | aca-miR-5412-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021856 | aca-miR-205b | 1 | __...... | 6 | 75 |
| MIMAT0021605 | gma-miR5037b | 1 | ......__ | 6 | 75 |
| MIMAT0020288 | ssp-miR528 | 8 | __...... | 3 | 75 |
| MIMAT0020662 | bdi-miR528-5p | 8 | __...... | 3 | 75 |
| MIMAT0027041 | hsa-miR-5088-3p | 2 | __...... | 7 | 75 |
| MIMAT0019939 | hsa-miR-4780 | 1 | _......_ | 6 | 75 |
| MIMAT0019519 | pma-miR-205b | 1 | __...... | 6 | 75 |
| MIMAT0019257 | oar-miR-1197-5p | 1 | __...... | 6 | 75 |
| MIMAT0018494 | csi-miR3952 | 7 | __...... | 2 | 75 |
| MIMAT0018913 | tca-miR-3905-5p | 7 | __...... | 2 | 75 |
| MIMAT0018170 | mghv-miR-M1-12-5p | 6 | _......_ | 1 | 75 |
| MIMAT0017964 | ssc-miR-652 | 3 | ......__ | 8 | 75 |
| MIMAT0022958 | ssc-miR-296-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016496 | cin-miR-4008a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016492 | cin-miR-1502c-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016483 | cin-miR-4006f-3p | 1 | _......_ | 6 | 75 |
| MIMAT0016276 | sja-miR-2c-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016253 | sja-miR-10-5p | 1 | ......__ | 6 | 75 |
| MIMAT0015999 | ppy-miR-553 | 8 | _......_ | 3 | 75 |
| MIMAT0015810 | ppy-miR-296-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015089 | hsa-miR-3202 | 8 | __...... | 3 | 75 |
| MIMAT0015056 | hsa-miR-3179 | 7 | __...... | 2 | 75 |
| MIMAT0015028 | hsa-miR-3154 | 8 | __...... | 3 | 75 |
| MIMAT0019201 | hsa-miR-3127-3p | 3 | __...... | 8 | 75 |
| MIMAT0014616 | tgu-miR-205 | 1 | __...... | 6 | 75 |
| MIMAT0014065 | rlcv-miR-rL1-20-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014048 | sbi-miR528 | 8 | __...... | 3 | 75 |
| MIMAT0014029 | zma-miR528b-5p | 8 | __...... | 3 | 75 |
| MIMAT0014028 | zma-miR528a-5p | 8 | __...... | 3 | 75 |
| MIMAT0013107 | eca-miR-296 | 7 | ......__ | 2 | 75 |
| MIMAT0013732 | bmo-miR-2780b | 6 | _......_ | 1 | 75 |
| MIMAT0013669 | bmo-miR-2780a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0012575 | aqc-miR395a | 8 | __...... | 3 | 75 |
| MIMAT0012574 | aqc-miR395b | 8 | __...... | 3 | 75 |
| MIMAT0013301 | mtr-miR2598 | 8 | _......_ | 3 | 75 |
| MIMAT0012063 | bta-miR-2472 | 8 | ......__ | 3 | 75 |
| MIMAT0011223 | sme-miR-10a-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009699 | aqu-miR-2020-3p | 8 | __...... | 3 | 75 |
| MIMAT0009654 | spu-miR-10 | 1 | ......__ | 6 | 75 |
| MIMAT0009468 | bfl-miR-10b | 1 | ......__ | 6 | 75 |
| MIMAT0009273 | bta-miR-296-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032098 | dvi-miR-219-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008079 | ptr-miR-296 | 7 | ......__ | 2 | 75 |
| MIMAT0006467 | mml-miR-616 | 2 | ......__ | 7 | 75 |
| MIMAT0006252 | mml-miR-296-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007471 | gga-miR-1605 | 6 | ......__ | 1 | 75 |
| MIMAT0007412 | gga-miR-1555-3p | 7 | ......__ | 2 | 75 |
| MIMAT0017321 | rno-miR-652-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005204 | ppt-miR1074 | 6 | ......__ | 1 | 75 |
| MIMAT0005172 | ppt-miR1054 | 3 | ......__ | 8 | 75 |
| MIMAT0004234 | cel-miR-799 | 3 | ......__ | 8 | 75 |
| MIMAT0003973 | sme-miR-10b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017260 | mmu-miR-652-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022709 | hsa-miR-652-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017211 | rno-miR-540-5p | 7 | _......_ | 2 | 75 |
| MIMAT0004786 | mmu-miR-540-5p | 7 | _......_ | 2 | 75 |
| MIMAT0002884 | osa-miR528-5p | 8 | __...... | 3 | 75 |
| MIMAT0002021 | ptc-miR395a | 8 | __...... | 3 | 75 |
| MIMAT0001164 | gga-miR-205b | 1 | __...... | 6 | 75 |
| MIMAT0031912 | ath-miR398c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031911 | ath-miR398b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004742 | rno-miR-296-3p | 7 | ......__ | 2 | 75 |
| MIMAT0004679 | hsa-miR-296-3p | 7 | ......__ | 2 | 75 |
| MIMAT0000576 | rno-miR-336-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004576 | mmu-miR-296-3p | 7 | ......__ | 2 | 75 |
| MIMAT0020803 | dme-miR-219-3p | 6 | ......__ | 1 | 75 |
