| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aacgacgg | 8 | ||
| MIMAT0037274 | ame-miR-9870 | 3 | _......_ | 8 | 75 |
| MIMAT0034301 | cfa-miR-8811 | 7 | _......_ | 2 | 75 |
| MIMAT0033017 | ppc-miR-8266-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031515 | ppe-miR535b | 3 | _......_ | 8 | 75 |
| MIMAT0030745 | prd-miR-7942-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026342 | bma-miR-5844 | 2 | ......__ | 7 | 75 |
| MIMAT0026027 | mdm-miR535d | 3 | _......_ | 8 | 75 |
| MIMAT0025297 | mja-miR-6489-3p | 1 | __...... | 6 | 75 |
| MIMAT0025015 | hme-miR-6308-3p | 1 | __...... | 6 | 75 |
| MIMAT0024929 | gma-miR6300 | 6 | ......__ | 1 | 75 |
| MIMAT0024857 | mmu-miR-6236 | 7 | __...... | 2 | 75 |
| MIMAT0024842 | hvu-miR6214 | 3 | _......_ | 8 | 75 |
| MIMAT0023567 | tca-miR-6013-5p | 8 | _......_ | 3 | 75 |
| MIMAT0023188 | gma-miR5783 | 2 | _......_ | 7 | 75 |
| MIMAT0021545 | asu-miR-5347-3p | 1 | __...... | 6 | 75 |
| MIMAT0019523 | pma-miR-212-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018542 | ame-miR-3768 | 3 | ......__ | 8 | 75 |
| MIMAT0016738 | cin-miR-4140-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016968 | cin-miR-4006a-2-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017765 | esi-miR3461-5p | 2 | __...... | 7 | 75 |
| MIMAT0017716 | aly-miR3441-3p.2 | 1 | ......__ | 6 | 75 |
| MIMAT0013850 | bta-miR-2892 | 3 | __...... | 8 | 75 |
| MIMAT0012713 | hvt-miR-H3-3p | 3 | __...... | 8 | 75 |
| MIMAT0013621 | bmo-miR-2807c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013586 | cte-miR-2717 | 3 | _......_ | 8 | 75 |
| MIMAT0012315 | dps-miR-2526-3p | 7 | __...... | 2 | 75 |
| MIMAT0007949 | ptr-miR-1181 | 6 | __...... | 1 | 75 |
| MIMAT0007414 | gga-miR-1557 | 7 | __...... | 2 | 75 |
| MIMAT0005826 | hsa-miR-1181 | 6 | __...... | 1 | 75 |
| MIMAT0017013 | mmu-miR-196a-1-3p | 2 | ......__ | 7 | 75 |
