| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aacggtgc | 8 | ||
| MIMAT0003442 | rlcv-miR-rL1-12-3p | 1 | ........ | 8 | 100 |
| MIMAT0034614 | eca-miR-9069 | 2 | _....... | 8 | 87 |
| MIMAT0033053 | ppc-miR-8277-5p | 1 | ......._ | 7 | 87 |
| MIMAT0031647 | bbe-miR-216-3p | 2 | _....... | 8 | 87 |
| MIMAT0024334 | mml-miR-1250 | 1 | _....... | 7 | 87 |
| MIMAT0024235 | ggo-miR-1250 | 1 | _....... | 7 | 87 |
| MIMAT0016340 | ahy-miR3514-3p | 8 | ......._ | 2 | 87 |
| MIMAT0016175 | ppy-miR-1250 | 1 | _....... | 7 | 87 |
| MIMAT0016944 | rlcv-miR-rL1-22-3p | 8 | ......._ | 2 | 87 |
| MIMAT0019150 | bfl-miR-216-3p | 2 | _....... | 8 | 87 |
| MIMAT0007976 | ptr-miR-1250 | 1 | _....... | 7 | 87 |
| MIMAT0005902 | hsa-miR-1250-5p | 1 | _....... | 7 | 87 |
| MIMAT0019881 | hsa-miR-4746-3p | 1 | .g...... | 8 | 87 |
| MIMAT0036929 | oha-miR-451-?? | 8 | ......__ | 3 | 75 |
| MIMAT0036237 | chi-miR-451-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035327 | gsa-miR-9391-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035029 | efu-miR-411 | 1 | _......_ | 6 | 75 |
| MIMAT0034747 | eca-miR-9169 | 3 | _......_ | 8 | 75 |
| MIMAT0034193 | gra-miR7502e | 3 | ......__ | 8 | 75 |
| MIMAT0033774 | pxy-miR-8531 | 1 | __...... | 6 | 75 |
| MIMAT0033211 | ppc-miR-8333-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032779 | ath-miR8180 | 3 | __...... | 8 | 75 |
| MIMAT0029861 | mmu-miR-7676-3p | 3 | __...... | 8 | 75 |
| MIMAT0029843 | mmu-miR-7668-3p | 1 | __...... | 6 | 75 |
| MIMAT0029096 | gga-miR-7471-5p | 3 | __...... | 8 | 75 |
| MIMAT0027848 | mmu-miR-6973a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0027819 | mmu-miR-6959-3p | 8 | __...... | 3 | 75 |
| MIMAT0025609 | gga-miR-6551-5p | 1 | __...... | 6 | 75 |
| MIMAT0025296 | mja-miR-6489-5p | 7 | __...... | 2 | 75 |
| MIMAT0024361 | ppy-miR-548e | 3 | ......__ | 8 | 75 |
| MIMAT0021960 | aca-miR-451-5p | 8 | ......__ | 3 | 75 |
| MIMAT0021545 | asu-miR-5347-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021068 | gma-miR169i-3p | 2 | __...... | 7 | 75 |
| MIMAT0019682 | osa-miR812o-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019631 | pma-miR-4598 | 1 | ......__ | 6 | 75 |
| MIMAT0019553 | pma-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0019241 | oar-miR-433-5p | 2 | _......_ | 7 | 75 |
| MIMAT0018382 | ssc-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0018827 | tca-miR-3867-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018690 | tca-miR-3830-5p | 3 | __...... | 8 | 75 |
| MIMAT0018538 | ame-miR-3720 | 3 | _......_ | 8 | 75 |
| MIMAT0015896 | ppy-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0014533 | tgu-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0013041 | eca-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0017369 | rno-miR-667-5p | 1 | __...... | 6 | 75 |
| MIMAT0013544 | cte-miR-2691-5p | 2 | _......_ | 7 | 75 |
| MIMAT0012442 | dsi-miR-968-3p | 6 | ......__ | 1 | 75 |
| MIMAT0011289 | dre-miR-2185-5p | 1 | __...... | 6 | 75 |
| MIMAT0009870 | cfa-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0009323 | bta-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0008234 | ptr-miR-553 | 3 | ......__ | 8 | 75 |
| MIMAT0008153 | ptr-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0006335 | mml-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0026875 | mml-miR-433-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007634 | gga-miR-1732 | 6 | _......_ | 1 | 75 |
| MIMAT0006901 | oan-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0004115 | mdo-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0003775 | gga-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0003705 | xtr-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0017239 | mmu-miR-667-5p | 1 | __...... | 6 | 75 |
| MIMAT0003435 | rlcv-miR-rL1-6-3p | 8 | __...... | 3 | 75 |
| MIMAT0003216 | hsa-miR-553 | 3 | ......__ | 8 | 75 |
| MIMAT0001634 | dre-miR-451 | 8 | ......__ | 3 | 75 |
| MIMAT0001633 | rno-miR-451-5p | 8 | ......__ | 3 | 75 |
| MIMAT0001632 | mmu-miR-451a | 8 | ......__ | 3 | 75 |
| MIMAT0001631 | hsa-miR-451a | 8 | ......__ | 3 | 75 |
| MIMAT0017192 | rno-miR-433-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026554 | hsa-miR-433-5p | 2 | _......_ | 7 | 75 |
| MIMAT0001419 | mmu-miR-433-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003390 | ebv-miR-BART1-3p | 8 | __...... | 3 | 75 |
