| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aactgat | 7 | ||
| MIMAT0036876 | oha-miR-29a-1-5p | 1 | ....... | 7 | 100 |
| MIMAT0036065 | chi-miR-217-3p | 8 | ....... | 2 | 100 |
| MIMAT0030764 | prd-miR-5594-5p | 7 | ....... | 1 | 100 |
| MIMAT0021879 | aca-miR-217-3p | 8 | ....... | 2 | 100 |
| MIMAT0027010 | tgu-miR-217-3p | 7 | ....... | 1 | 100 |
| MIMAT0012355 | dps-miR-2547-3p | 1 | ....... | 7 | 100 |
| MIMAT0007222 | oan-miR-217-3p | 8 | ....... | 2 | 100 |
| MIMAT0006990 | oan-miR-1358 | 1 | ....... | 7 | 100 |
| MIMAT0004258 | ath-miR837-5p | 7 | ....... | 1 | 100 |
| MIMAT0017161 | rno-miR-217-3p | 7 | ....... | 1 | 100 |
| MIMAT0017072 | mmu-miR-217-3p | 8 | ....... | 2 | 100 |
| MIMAT0036853 | oha-miR-223-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036112 | chi-miR-29a-5p | 1 | _...... | 6 | 85 |
| MIMAT0036072 | chi-miR-223-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035899 | chi-miR-101-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035289 | gsa-miR-9-3p | 8 | _...... | 3 | 85 |
| MIMAT0035198 | efu-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0034840 | efu-miR-9237c | 7 | _...... | 2 | 85 |
| MIMAT0034713 | eca-miR-8908a | 6 | _...... | 1 | 85 |
| MIMAT0034698 | eca-miR-8908d | 7 | _...... | 2 | 85 |
| MIMAT0034252 | gra-miR8704 | 8 | ......_ | 3 | 85 |
| MIMAT0033817 | pxy-miR-8547 | 3 | ......_ | 8 | 85 |
| MIMAT0033035 | ppc-miR-8271-5p | 7 | _...... | 2 | 85 |
| MIMAT0033016 | ppc-miR-8266-5p | 8 | _...... | 3 | 85 |
| MIMAT0032587 | ssa-miR-29b-2-5p | 3 | _...... | 8 | 85 |
| MIMAT0032585 | ssa-miR-29b-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0032426 | ssa-miR-181c-3p | 3 | _...... | 8 | 85 |
| MIMAT0032280 | ssa-miR-101a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031844 | cpa-miR8147 | 1 | _...... | 6 | 85 |
| MIMAT0031395 | mmu-miR-8094 | 1 | ......_ | 6 | 85 |
| MIMAT0030154 | bdi-miR7716-5p | 6 | ......_ | 1 | 85 |
| MIMAT0029805 | mmu-miR-7651-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029537 | ipu-miR-29a | 1 | _...... | 6 | 85 |
| MIMAT0031055 | oan-miR-181b-2-3p | 1 | _...... | 6 | 85 |
| MIMAT0031046 | mdo-miR-181b-2-3p | 3 | _...... | 8 | 85 |
| MIMAT0028382 | mml-miR-7208-5p | 1 | ......_ | 6 | 85 |
| MIMAT0024594 | bta-miR-6122-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027106 | mml-miR-873-3p | 3 | _...... | 8 | 85 |
| MIMAT0023883 | cgr-miR-29a-5p | 1 | _...... | 6 | 85 |
| MIMAT0022630 | ola-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0022605 | ola-miR-101b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022542 | ola-miR-101a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0023097 | tur-miR-34-3p | 3 | _...... | 8 | 85 |
| MIMAT0022351 | cin-miR-5612-5p | 8 | ......_ | 3 | 85 |
| MIMAT0022678 | aau-miR168 | 8 | ......_ | 3 | 85 |
| MIMAT0021894 | aca-miR-223-3p | 8 | ......_ | 3 | 85 |
| MIMAT0021710 | aca-miR-101-1-5p | 6 | ......_ | 1 | 85 |
| MIMAT0021086 | hsa-miR-5094 | 7 | _...... | 2 | 85 |
| MIMAT0019841 | hsa-miR-4724-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019416 | pma-miR-29a-5p | 1 | _...... | 6 | 85 |
| MIMAT0018195 | hsa-miR-3920 | 1 | _...... | 6 | 85 |
| MIMAT0018830 | tca-miR-3869-5p | 1 | _...... | 6 | 85 |
| MIMAT0016601 | cin-miR-4056-5p | 1 | _...... | 6 | 85 |
| MIMAT0014599 | tgu-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0026990 | tgu-miR-29a-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0014631 | tgu-miR-101-2-5p | 6 | ......_ | 1 | 85 |
| MIMAT0013817 | osa-miR2870 | 8 | _...... | 3 | 85 |
| MIMAT0013205 | eca-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0017367 | rno-miR-465-3p | 8 | _...... | 3 | 85 |
| MIMAT0012723 | iltv-miR-I1-5p | 3 | _...... | 8 | 85 |
| MIMAT0011881 | bta-miR-2346 | 1 | _...... | 6 | 85 |
| MIMAT0011806 | bta-miR-2298 | 2 | _...... | 7 | 85 |
| MIMAT0009852 | cfa-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0009771 | nve-miR-2026-3p | 7 | _...... | 2 | 85 |
| MIMAT0009270 | bta-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0011144 | xla-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0031042 | mml-miR-181b-2-3p | 1 | _...... | 6 | 85 |
| MIMAT0031077 | gga-miR-101-2-5p | 6 | ......_ | 1 | 85 |
| MIMAT0007020 | oan-miR-223-3p | 8 | ......_ | 3 | 85 |
| MIMAT0006806 | oan-miR-29a-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0005014 | pta-miR952b | 1 | ......_ | 6 | 85 |
| MIMAT0004369 | ppt-miR899 | 1 | ......_ | 6 | 85 |
| MIMAT0004135 | mdo-miR-223-3p | 8 | ......_ | 3 | 85 |
| MIMAT0031076 | mdo-miR-101-1-5p | 6 | ......_ | 1 | 85 |
| MIMAT0012096 | sme-miR-7a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003634 | xtr-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0022708 | hsa-miR-584-3p | 6 | ......_ | 1 | 85 |
| MIMAT0002895 | tni-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0002894 | fru-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0002593 | ppa-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0002592 | sla-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0002591 | ppy-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0002590 | ggo-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0002589 | ptr-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0002588 | mml-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0026581 | mml-miR-101-1-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022699 | mmu-miR-468-5p | 2 | _...... | 7 | 85 |
| MIMAT0015207 | zma-miR393a-3p | 6 | _...... | 1 | 85 |
| MIMAT0001290 | dre-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0031059 | gga-miR-181b-2-3p | 3 | _...... | 8 | 85 |
| MIMAT0001140 | gga-miR-223 | 8 | ......_ | 3 | 85 |
| MIMAT0026513 | gga-miR-217-3p | 8 | _...... | 3 | 85 |
| MIMAT0000892 | rno-miR-223-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004726 | rno-miR-101a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004718 | rno-miR-29a-5p | 1 | _...... | 6 | 85 |
| MIMAT0000665 | mmu-miR-223-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004631 | mmu-miR-29a-5p | 1 | _...... | 6 | 85 |
| MIMAT0000280 | hsa-miR-223-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004526 | mmu-miR-101a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004503 | hsa-miR-29a-5p | 1 | _...... | 6 | 85 |
