| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aacttac | 7 | ||
| MIMAT0030758 | prd-miR-7947-5p | 7 | ....... | 1 | 100 |
| MIMAT0030700 | prd-miR-7926-5p | 7 | ....... | 1 | 100 |
| MIMAT0029618 | crm-miR-7601 | 7 | ....... | 1 | 100 |
| MIMAT0027842 | mmu-miR-6970-5p | 7 | ....... | 1 | 100 |
| MIMAT0020029 | sko-miR-4824 | 2 | ....... | 8 | 100 |
| MIMAT0019993 | cel-miR-4809-5p | 7 | ....... | 1 | 100 |
| MIMAT0016957 | rlcv-miR-rL1-32-5p | 2 | ....... | 8 | 100 |
| MIMAT0013546 | cte-miR-1990a | 8 | ....... | 2 | 100 |
| MIMAT0012216 | dme-miR-2501-5p | 7 | ....... | 1 | 100 |
| MIMAT0009732 | lgi-miR-1990 | 8 | ....... | 2 | 100 |
| MIMAT0009718 | hru-miR-1990 | 8 | ....... | 2 | 100 |
| MIMAT0036378 | gma-miR9750 | 7 | _...... | 2 | 85 |
| MIMAT0035708 | mse-miR-9571b | 8 | ......_ | 3 | 85 |
| MIMAT0035556 | dvi-miR-1010-5p | 6 | _...... | 1 | 85 |
| MIMAT0035371 | nve-miR-9415 | 3 | _...... | 8 | 85 |
| MIMAT0035338 | gsa-miR-9396-5p | 6 | _...... | 1 | 85 |
| MIMAT0033586 | sma-miR-8441-5p | 7 | _...... | 2 | 85 |
| MIMAT0031537 | ppe-miR7125-3p | 3 | ......_ | 8 | 85 |
| MIMAT0030604 | prd-miR-4816-5p | 6 | _...... | 1 | 85 |
| MIMAT0030473 | prd-miR-7867-3p | 1 | ......_ | 6 | 85 |
| MIMAT0029656 | cbn-miR-7617 | 6 | _...... | 1 | 85 |
| MIMAT0026401 | sbi-miR5568c-3p | 1 | _...... | 6 | 85 |
| MIMAT0026059 | mdm-miR7125 | 3 | ......_ | 8 | 85 |
| MIMAT0025126 | mmu-miR-6380 | 7 | _...... | 2 | 85 |
| MIMAT0027249 | pgi-miR6135h | 8 | _...... | 3 | 85 |
| MIMAT0027248 | pgi-miR6135g | 8 | _...... | 3 | 85 |
| MIMAT0027247 | pgi-miR6135f | 8 | _...... | 3 | 85 |
| MIMAT0027245 | pgi-miR6135e-5p | 8 | _...... | 3 | 85 |
| MIMAT0027244 | pgi-miR6135d | 8 | _...... | 3 | 85 |
| MIMAT0027243 | pgi-miR6135c | 8 | _...... | 3 | 85 |
| MIMAT0027242 | pgi-miR6135b | 8 | _...... | 3 | 85 |
| MIMAT0027241 | pgi-miR6135a | 8 | _...... | 3 | 85 |
| MIMAT0023144 | mtr-miR5758 | 6 | ......_ | 1 | 85 |
| MIMAT0022361 | mmu-miR-5617-5p | 6 | _...... | 1 | 85 |
| MIMAT0020130 | cel-miR-4924 | 6 | _...... | 1 | 85 |
| MIMAT0020059 | sko-miR-4839 | 6 | ......_ | 1 | 85 |
| MIMAT0020005 | cel-miR-4816-5p | 6 | _...... | 1 | 85 |
| MIMAT0019988 | cel-miR-4806-5p | 2 | _...... | 7 | 85 |
| MIMAT0019310 | oar-miR-668-5p | 6 | _...... | 1 | 85 |
| MIMAT0018137 | pab-miR3705 | 6 | _...... | 1 | 85 |
| MIMAT0016704 | cin-miR-4114-5p | 6 | ......_ | 1 | 85 |
| MIMAT0016542 | cin-miR-4026-5p | 6 | _...... | 1 | 85 |
| MIMAT0016538 | cin-miR-4023-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016494 | cin-miR-1502d-3p | 1 | _...... | 6 | 85 |
| MIMAT0015611 | bmo-miR-3406-5p | 8 | _...... | 3 | 85 |
| MIMAT0015555 | bmo-miR-3369 | 2 | _...... | 7 | 85 |
| MIMAT0014665 | bmo-miR-3001 | 6 | ......_ | 1 | 85 |
| MIMAT0013547 | cte-miR-1990b | 6 | ......_ | 1 | 85 |
| MIMAT0013422 | mtr-miR2650 | 1 | ......_ | 6 | 85 |
| MIMAT0012521 | dsi-miR-2494-5p | 6 | _...... | 1 | 85 |
| MIMAT0012512 | dsi-miR-2579 | 6 | _...... | 1 | 85 |
| MIMAT0012463 | dsi-miR-1010-5p | 6 | _...... | 1 | 85 |
| MIMAT0012358 | dps-miR-2549-5p | 6 | _...... | 1 | 85 |
| MIMAT0012324 | dps-miR-2535-5p | 6 | _...... | 1 | 85 |
| MIMAT0012273 | dps-miR-1010-5p | 6 | _...... | 1 | 85 |
| MIMAT0012256 | dps-miR-964-3p | 6 | ......_ | 1 | 85 |
| MIMAT0012202 | dme-miR-2494-5p | 6 | _...... | 1 | 85 |
| MIMAT0020910 | dme-miR-2489-5p | 6 | ......_ | 1 | 85 |
| MIMAT0008269 | ptr-miR-600 | 1 | _...... | 6 | 85 |
| MIMAT0007855 | ath-miR1888a | 6 | ......_ | 1 | 85 |
| MIMAT0007107 | oan-miR-1377 | 8 | _...... | 3 | 85 |
| MIMAT0020356 | cel-miR-1020-5p | 6 | _...... | 1 | 85 |
| MIMAT0005448 | mmu-miR-467b-5p | 6 | _...... | 1 | 85 |
| MIMAT0017237 | mmu-miR-668-5p | 6 | _...... | 1 | 85 |
| MIMAT0017233 | mmu-miR-216b-3p | 3 | _...... | 8 | 85 |
| MIMAT0003268 | hsa-miR-600 | 1 | _...... | 6 | 85 |
