| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagaacg | 7 | ||
| MIMAT0032546 | ssa-miR-22b-5p | 7 | ....... | 1 | 100 |
| MIMAT0022096 | aca-miR-5464-5p | 8 | ....... | 2 | 100 |
| MIMAT0018263 | gma-miR1520j | 1 | ....... | 7 | 100 |
| MIMAT0031943 | dre-miR-22b-5p | 7 | ....... | 1 | 100 |
| MIMAT0035766 | tae-miR9658-3p | 8 | _...... | 3 | 85 |
| MIMAT0035695 | bra-miR9563b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035384 | nve-miR-9425 | 1 | ......_ | 6 | 85 |
| MIMAT0035373 | nve-miR-9417 | 3 | _...... | 8 | 85 |
| MIMAT0035372 | nve-miR-9416 | 1 | ......_ | 6 | 85 |
| MIMAT0034581 | eca-miR-9039 | 8 | _...... | 3 | 85 |
| MIMAT0034438 | eca-miR-8910 | 3 | ......_ | 8 | 85 |
| MIMAT0034328 | cfa-miR-8835 | 8 | _...... | 3 | 85 |
| MIMAT0033566 | sma-miR-8431-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031651 | bbe-miR-219-3p | 1 | ......_ | 6 | 85 |
| MIMAT0030155 | bdi-miR7716-3p | 8 | _...... | 3 | 85 |
| MIMAT0029163 | ghr-miR7510b | 1 | ......_ | 6 | 85 |
| MIMAT0028306 | mml-miR-4677-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028079 | mmu-miR-7086-3p | 8 | _...... | 3 | 85 |
| MIMAT0024870 | osa-miR5337b | 3 | _...... | 8 | 85 |
| MIMAT0023573 | tca-miR-6016-5p | 3 | ......_ | 8 | 85 |
| MIMAT0022478 | hsa-miR-5687 | 3 | _...... | 8 | 85 |
| MIMAT0022284 | hsa-miR-5584-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022082 | aca-miR-5455-3p | 8 | ......_ | 3 | 85 |
| MIMAT0021833 | aca-miR-196c-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021311 | mtr-miR5274a | 6 | _...... | 1 | 85 |
| MIMAT0019760 | hsa-miR-4677-5p | 8 | ......_ | 3 | 85 |
| MIMAT0018264 | gma-miR4365 | 1 | ......_ | 6 | 85 |
| MIMAT0018174 | mghv-miR-M1-14-5p | 8 | _...... | 3 | 85 |
| MIMAT0018166 | mghv-miR-M1-10-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016441 | cin-miR-4000h-3p | 8 | _...... | 3 | 85 |
| MIMAT0014998 | hsa-miR-3133 | 3 | ......_ | 8 | 85 |
| MIMAT0014659 | bmo-miR-2998 | 1 | ......_ | 6 | 85 |
| MIMAT0014052 | osa-miR2921 | 1 | ......_ | 6 | 85 |
| MIMAT0011951 | bta-miR-2397-5p | 8 | _...... | 3 | 85 |
| MIMAT0032070 | dvi-miR-6-3-5p | 3 | _...... | 8 | 85 |
| MIMAT0032025 | ath-miR870-5p | 1 | ......_ | 6 | 85 |
