| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagaagag | 8 | ||
| MIMAT0021131 | hsa-miR-5197-3p | 1 | ........ | 8 | 100 |
| MIMAT0012588 | aqc-miR477d | 8 | ........ | 1 | 100 |
| MIMAT0034560 | eca-miR-9019 | 1 | _....... | 7 | 87 |
| MIMAT0032836 | cel-miR-8209-3p | 7 | ......._ | 1 | 87 |
| MIMAT0030379 | ptc-miR7817b | 8 | _....... | 2 | 87 |
| MIMAT0027814 | mmu-miR-6957-5p | 2 | _....... | 8 | 87 |
| MIMAT0020754 | bdi-miR529-5p | 1 | _....... | 7 | 87 |
| MIMAT0019937 | hsa-miR-4778-3p | 7 | ......._ | 1 | 87 |
| MIMAT0020967 | bcy-miR529 | 2 | ......._ | 8 | 87 |
| MIMAT0020963 | bgy-miR529 | 2 | ......._ | 8 | 87 |
| MIMAT0018373 | far-miR529 | 1 | _....... | 7 | 87 |
| MIMAT0017613 | aly-miR831-5p | 1 | _....... | 7 | 87 |
| MIMAT0014498 | tgu-miR-2988 | 8 | _....... | 2 | 87 |
| MIMAT0014059 | osa-miR2928 | 1 | ......._ | 7 | 87 |
| MIMAT0014030 | zma-miR529-5p | 1 | _....... | 7 | 87 |
| MIMAT0012592 | aqc-miR529 | 1 | _....... | 7 | 87 |
| MIMAT0026911 | mml-miR-877-3p | 8 | _....... | 2 | 87 |
| MIMAT0005059 | ppt-miR529f | 1 | _....... | 7 | 87 |
| MIMAT0005058 | ppt-miR529e | 1 | _....... | 7 | 87 |
| MIMAT0005057 | ppt-miR529d | 1 | _....... | 7 | 87 |
| MIMAT0005015 | osa-miR529b | 1 | _....... | 7 | 87 |
| MIMAT0036658 | oha-miR-103b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0036656 | oha-miR-103a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0036654 | oha-miR-107-5p | 8 | ......__ | 3 | 75 |
| MIMAT0036381 | gma-miR9752 | 8 | ......__ | 3 | 75 |
| MIMAT0036301 | chi-miR-877-3p | 8 | __...... | 3 | 75 |
| MIMAT0035920 | chi-miR-1248-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035901 | chi-miR-103-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035791 | tae-miR9673-5p | 2 | ......__ | 7 | 75 |
| MIMAT0035251 | gsa-miR-71b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0034898 | efu-miR-9268 | 6 | _......_ | 1 | 75 |
| MIMAT0034687 | eca-miR-9136 | 3 | ......__ | 8 | 75 |
| MIMAT0034549 | eca-miR-9009 | 1 | _......_ | 6 | 75 |
| MIMAT0034343 | cfa-miR-8848 | 6 | _......_ | 1 | 75 |
| MIMAT0034137 | gra-miR8732 | 1 | __...... | 6 | 75 |
| MIMAT0033901 | atr-miR8610.1 | 8 | ......__ | 3 | 75 |
| MIMAT0033456 | str-miR-255-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033151 | ppc-miR-8310-3p | 8 | _......_ | 3 | 75 |
| MIMAT0033023 | ppc-miR-8268-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032355 | ssa-miR-138-4-3p | 8 | ......__ | 3 | 75 |
| MIMAT0032290 | ssa-miR-107-5p | 8 | ......__ | 3 | 75 |
| MIMAT0031652 | bbe-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0030909 | stu-miR8013 | 1 | _......_ | 6 | 75 |
| MIMAT0030373 | ptc-miR7815 | 6 | __...... | 1 | 75 |
| MIMAT0032249 | rgl-miR7806 | 2 | _......_ | 7 | 75 |
| MIMAT0030327 | bdi-miR7785-3p | 8 | _......_ | 3 | 75 |
| MIMAT0030108 | bdi-miR5181c-3p | 7 | ......__ | 2 | 75 |
| MIMAT0028867 | mdo-miR-7386o-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028863 | mdo-miR-7386m-3p | 2 | ......__ | 7 | 75 |
| MIMAT0028849 | mdo-miR-7386k-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026068 | mdm-miR169f | 2 | __...... | 7 | 75 |
| MIMAT0026067 | mdm-miR169e | 2 | __...... | 7 | 75 |
| MIMAT0027918 | mmu-miR-7007-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027793 | mmu-miR-6946-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027382 | hsa-miR-6740-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025823 | gga-miR-6713-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025727 | gga-miR-6631-5p | 1 | __...... | 6 | 75 |
| MIMAT0025661 | gga-miR-6577-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025487 | hsa-miR-6515-3p | 7 | __...... | 2 | 75 |
| MIMAT0032137 | sma-miR-36a-5p | 1 | __...... | 6 | 75 |
| MIMAT0027319 | ppe-miR6287 | 2 | ......__ | 7 | 75 |
| MIMAT0024805 | hvu-miR6181 | 8 | __...... | 3 | 75 |
| MIMAT0024557 | cca-miR6108e-5p | 3 | ......__ | 8 | 75 |
| MIMAT0024536 | cca-miR6103-3p | 2 | ......__ | 7 | 75 |
| MIMAT0027113 | mml-miR-676-5p | 6 | __...... | 1 | 75 |
| MIMAT0023730 | cgr-miR-103-5p | 8 | ......__ | 3 | 75 |
| MIMAT0023702 | hsa-miR-6077 | 3 | __...... | 8 | 75 |
| MIMAT0023573 | tca-miR-6016-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022053 | aca-miR-5432 | 1 | ......__ | 6 | 75 |
| MIMAT0022012 | aca-miR-5402-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021715 | aca-miR-103-5p | 8 | ......__ | 3 | 75 |
| MIMAT0021713 | aca-miR-107-5p | 8 | ......__ | 3 | 75 |
| MIMAT0021310 | mtr-miR2629h | 3 | _......_ | 8 | 75 |
| MIMAT0021186 | mtr-miR5227 | 2 | __...... | 7 | 75 |
| MIMAT0021185 | mtr-miR5224b | 3 | __...... | 8 | 75 |
| MIMAT0020525 | ath-miR5021 | 3 | _......_ | 8 | 75 |
| MIMAT0019812 | hsa-miR-4709-3p | 3 | __...... | 8 | 75 |
| MIMAT0019794 | hsa-miR-4699-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019734 | hsa-miR-4659b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019727 | hsa-miR-4659a-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018339 | gma-miR156g | 3 | _......_ | 8 | 75 |
| MIMAT0018791 | tca-miR-3859-3p | 1 | __...... | 6 | 75 |
| MIMAT0018761 | tca-miR-3852-3p | 6 | _......_ | 1 | 75 |
| MIMAT0018650 | tca-miR-3811d-5p | 7 | _......_ | 2 | 75 |
| MIMAT0018073 | hsa-miR-3653-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016769 | cin-miR-4162-3p | 1 | ......__ | 6 | 75 |
| MIMAT0016715 | cin-miR-4123-5p | 8 | ......__ | 3 | 75 |
| MIMAT0016173 | ppy-miR-1248 | 8 | ......__ | 3 | 75 |
| MIMAT0016166 | ppy-miR-1236 | 7 | __...... | 2 | 75 |
| MIMAT0016020 | ppy-miR-578 | 6 | ......__ | 1 | 75 |
| MIMAT0017680 | aly-miR163-3p.1 | 2 | __...... | 7 | 75 |
| MIMAT0017656 | aly-miR868-3p | 6 | ......__ | 1 | 75 |
| MIMAT0017620 | aly-miR835-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015417 | bmo-miR-2808e | 3 | _......_ | 8 | 75 |
| MIMAT0015065 | hsa-miR-3185 | 1 | _......_ | 6 | 75 |
| MIMAT0015065 | hsa-miR-3185 | 3 | ......__ | 8 | 75 |
| MIMAT0014666 | hma-miR-3002 | 2 | _......_ | 7 | 75 |
| MIMAT0026985 | tgu-miR-103-5p | 8 | ......__ | 3 | 75 |
| MIMAT0014061 | osa-miR2930 | 8 | __...... | 3 | 75 |
| MIMAT0017382 | ssc-miR-676-5p | 6 | __...... | 1 | 75 |
| MIMAT0013091 | eca-miR-1248 | 8 | ......__ | 3 | 75 |
| MIMAT0012729 | iltv-miR-I5-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013494 | mtr-miR2673b | 7 | __...... | 2 | 75 |
| MIMAT0013493 | mtr-miR2673a | 7 | __...... | 2 | 75 |
| MIMAT0013481 | mtr-miR2670d | 2 | ......__ | 7 | 75 |
| MIMAT0013480 | mtr-miR2670c | 2 | ......__ | 7 | 75 |
| MIMAT0013479 | mtr-miR2670b | 2 | ......__ | 7 | 75 |
| MIMAT0013478 | mtr-miR2670a | 2 | ......__ | 7 | 75 |
| MIMAT0012139 | sme-miR-8b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0010059 | osa-miR2097-3p | 8 | __...... | 3 | 75 |
| MIMAT0009972 | bta-miR-1248 | 8 | ......__ | 3 | 75 |
| MIMAT0009929 | cfa-miR-300 | 3 | __...... | 8 | 75 |
| MIMAT0009915 | cfa-miR-578 | 6 | ......__ | 1 | 75 |
| MIMAT0009756 | nve-miR-2023-3p | 2 | ......__ | 7 | 75 |
| MIMAT0019138 | bfl-miR-22-5p | 8 | __...... | 3 | 75 |
| MIMAT0032046 | dvi-miR-13a-5p | 6 | __...... | 1 | 75 |
| MIMAT0008348 | ptr-miR-942 | 6 | _......_ | 1 | 75 |
| MIMAT0007978 | ptr-miR-1253 | 3 | _......_ | 8 | 75 |
| MIMAT0007974 | ptr-miR-1248 | 8 | ......__ | 3 | 75 |
| MIMAT0007968 | ptr-miR-1236 | 7 | __...... | 2 | 75 |
| MIMAT0007868 | mmu-miR-1903 | 7 | ......__ | 2 | 75 |
| MIMAT0006762 | cfa-miR-676 | 6 | __...... | 1 | 75 |
| MIMAT0006559 | vvi-miR395n | 3 | __...... | 8 | 75 |
| MIMAT0006439 | mml-miR-578 | 6 | ......__ | 1 | 75 |
| MIMAT0007118 | oan-miR-107-5p | 8 | ......__ | 3 | 75 |
| MIMAT0006941 | oan-miR-103-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0005904 | hsa-miR-1253 | 3 | _......_ | 8 | 75 |
| MIMAT0005900 | hsa-miR-1248 | 8 | ......__ | 3 | 75 |
| MIMAT0005591 | hsa-miR-1236-3p | 7 | __...... | 2 | 75 |
| MIMAT0005534 | mcmv-miR-m01-2-5p | 1 | __...... | 6 | 75 |
| MIMAT0005397 | cre-miR1152 | 2 | ......__ | 7 | 75 |
| MIMAT0005240 | smo-miR1088-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005060 | ppt-miR529g | 2 | __...... | 7 | 75 |
| MIMAT0005056 | ppt-miR529c | 2 | __...... | 7 | 75 |
| MIMAT0005055 | ppt-miR529b | 2 | __...... | 7 | 75 |
| MIMAT0005054 | ppt-miR529a | 2 | __...... | 7 | 75 |
| MIMAT0004989 | pta-miR156b | 2 | _......_ | 7 | 75 |
| MIMAT0004988 | pta-miR156a | 2 | _......_ | 7 | 75 |
| MIMAT0004985 | hsa-miR-942-5p | 6 | _......_ | 1 | 75 |
| MIMAT0004965 | cre-miR908.1 | 3 | _......_ | 8 | 75 |
| MIMAT0004389 | cre-miR907 | 6 | _......_ | 1 | 75 |
| MIMAT0004950 | hsa-miR-877-3p | 8 | __...... | 3 | 75 |
| MIMAT0004319 | ath-miR868-3p | 6 | ......__ | 1 | 75 |
| MIMAT0004247 | ath-miR830-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031097 | mdo-miR-103-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0004012 | sme-miR-281-5p | 2 | __...... | 7 | 75 |
| MIMAT0003243 | hsa-miR-578 | 6 | ......__ | 1 | 75 |
| MIMAT0026584 | mml-miR-107-5p | 8 | ......__ | 3 | 75 |
| MIMAT0031959 | dre-miR-107a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026520 | gga-miR-107-5p | 8 | ......__ | 3 | 75 |
| MIMAT0026519 | gga-miR-103-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0004743 | rno-miR-300-5p | 3 | __...... | 8 | 75 |
| MIMAT0017115 | rno-miR-107-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017114 | rno-miR-103-1-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017113 | rno-miR-103-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017048 | mmu-miR-107-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017025 | mmu-miR-103-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017024 | mmu-miR-103-1-5p | 8 | ......__ | 3 | 75 |
| MIMAT0004578 | mmu-miR-300-5p | 3 | __...... | 8 | 75 |
| MIMAT0000184 | ath-miR163 | 3 | __...... | 8 | 75 |
| MIMAT0009196 | hsa-miR-103a-2-5p | 8 | ......__ | 3 | 75 |
