| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagacgga | 8 | ||
| MIMAT0032238 | rgl-miR7797a | 1 | ........ | 8 | 100 |
| MIMAT0023267 | osa-miR812s | 1 | ........ | 8 | 100 |
| MIMAT0007850 | osa-miR812j | 1 | ........ | 8 | 100 |
| MIMAT0007849 | osa-miR812i | 1 | ........ | 8 | 100 |
| MIMAT0007848 | osa-miR812h | 1 | ........ | 8 | 100 |
| MIMAT0007847 | osa-miR812g | 1 | ........ | 8 | 100 |
| MIMAT0036156 | chi-miR-340-3p | 7 | _....... | 1 | 87 |
| MIMAT0033727 | pxy-miR-184 | 2 | _....... | 8 | 87 |
| MIMAT0024191 | ggo-miR-483 | 1 | ......._ | 7 | 87 |
| MIMAT0023921 | cgr-miR-340-3p | 7 | _....... | 1 | 87 |
| MIMAT0022163 | osa-miR5528 | 1 | ......._ | 7 | 87 |
| MIMAT0018278 | gma-miR4374a | 2 | ......._ | 8 | 87 |
| MIMAT0018267 | gma-miR4368a | 1 | ......._ | 7 | 87 |
| MIMAT0018233 | gma-miR4345 | 2 | ......._ | 8 | 87 |
| MIMAT0017484 | aly-miR168b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0013067 | eca-miR-340-3p | 7 | _....... | 1 | 87 |
| MIMAT0009296 | bta-miR-340 | 7 | _....... | 1 | 87 |
| MIMAT0026854 | mml-miR-340-3p | 7 | _....... | 1 | 87 |
| MIMAT0007228 | oan-miR-1410 | 2 | _....... | 8 | 87 |
| MIMAT0017201 | rno-miR-483-5p | 1 | ......._ | 7 | 87 |
| MIMAT0004782 | mmu-miR-483-5p | 1 | ......._ | 7 | 87 |
| MIMAT0004761 | hsa-miR-483-5p | 1 | ......._ | 7 | 87 |
| MIMAT0000750 | hsa-miR-340-3p | 7 | _....... | 1 | 87 |
| MIMAT0000586 | mmu-miR-340-3p | 7 | _....... | 1 | 87 |
| MIMAT0000585 | rno-miR-340-3p | 7 | _....... | 1 | 87 |
| MIMAT0031885 | ath-miR168b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0023679 | ame-miR-6055 | 1 | ......a. | 8 | 87 |
| MIMAT0023268 | osa-miR5799 | 1 | ......a. | 8 | 87 |
| MIMAT0037271 | ame-miR-9867 | 1 | _......_ | 6 | 75 |
| MIMAT0036821 | oha-miR-208-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036493 | tch-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0036009 | chi-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0035685 | bra-miR9563a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0035303 | gsa-miR-184b-3p | 3 | __...... | 8 | 75 |
| MIMAT0035257 | gsa-miR-96a-3p | 1 | __...... | 6 | 75 |
| MIMAT0035251 | gsa-miR-71b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035249 | gsa-miR-184a-3p | 3 | __...... | 8 | 75 |
| MIMAT0034642 | eca-miR-9096 | 7 | ......__ | 2 | 75 |
| MIMAT0034040 | gra-miR8669 | 2 | ......__ | 7 | 75 |
| MIMAT0033441 | str-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0032942 | ppc-miR-8242-5p | 8 | __...... | 3 | 75 |
| MIMAT0032925 | ppc-miR-8235-3p | 7 | _......_ | 2 | 75 |
| MIMAT0032685 | ssa-miR-736-3p | 3 | ......__ | 8 | 75 |
| MIMAT0031602 | bbe-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0030837 | prd-miR-7967-3p | 3 | __...... | 8 | 75 |
| MIMAT0030789 | prd-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0030667 | prd-miR-7916-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032211 | lva-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0032163 | pmi-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0029441 | ipu-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0028613 | mdo-miR-208b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028313 | mml-miR-6827-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026418 | sbi-miR6224c-5p | 7 | __...... | 2 | 75 |
| MIMAT0026416 | sbi-miR6224b-5p | 7 | __...... | 2 | 75 |
| MIMAT0026414 | sbi-miR6224a-5p | 7 | __...... | 2 | 75 |
| MIMAT0026244 | ccr-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0027555 | hsa-miR-6827-3p | 7 | _......_ | 2 | 75 |
| MIMAT0025837 | gga-miR-6599-3p | 2 | __...... | 7 | 75 |
| MIMAT0025634 | gga-miR-6564-3p | 3 | __...... | 8 | 75 |
| MIMAT0025297 | mja-miR-6489-3p | 2 | __...... | 7 | 75 |
| MIMAT0024943 | hme-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0024477 | mse-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0023809 | cgr-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0023555 | tca-miR-6007-5p | 3 | ......__ | 8 | 75 |
| MIMAT0026460 | hhv6b-miR-Ro6-3-5p | 1 | __...... | 6 | 75 |
| MIMAT0023294 | osa-miR5821 | 3 | __...... | 8 | 75 |
| MIMAT0023257 | osa-miR5790 | 1 | ......__ | 6 | 75 |
| MIMAT0023254 | osa-miR812p | 1 | __...... | 6 | 75 |
| MIMAT0022536 | ola-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0023073 | tur-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0023048 | tur-miR-745-5p | 8 | __...... | 3 | 75 |
| MIMAT0022349 | cin-miR-5611-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021860 | aca-miR-208-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021814 | aca-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0021535 | asu-miR-1822-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021502 | asu-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0021326 | mtr-miR5282 | 1 | __...... | 6 | 75 |
| MIMAT0019979 | hsa-miR-4800-3p | 8 | __...... | 3 | 75 |
| MIMAT0019521 | pma-miR-208-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019493 | pma-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0018425 | nlo-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0018398 | ngi-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0018848 | tca-miR-3878-5p | 3 | __...... | 8 | 75 |
| MIMAT0018842 | tca-miR-3875-5p | 7 | ......__ | 2 | 75 |
| MIMAT0018528 | ame-miR-3049-3p | 6 | __...... | 1 | 75 |
| MIMAT0016602 | cin-miR-4056-3p | 8 | ......__ | 3 | 75 |
| MIMAT0016569 | cin-miR-4040-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016401 | cin-miR-29-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017845 | rno-miR-208b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016307 | sja-miR-3498 | 2 | _......_ | 7 | 75 |
| MIMAT0015800 | ppy-miR-208b | 3 | ......__ | 8 | 75 |
| MIMAT0015799 | ppy-miR-208a | 3 | ......__ | 8 | 75 |
| MIMAT0015671 | nvi-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0017760 | esi-miR3454b-3p | 8 | __...... | 3 | 75 |
| MIMAT0017754 | esi-miR3454f-3p | 8 | __...... | 3 | 75 |
| MIMAT0014765 | api-miR-3029 | 2 | ......__ | 7 | 75 |
| MIMAT0014715 | api-miR-184b | 3 | __...... | 8 | 75 |
| MIMAT0014684 | hma-miR-2030 | 6 | ......__ | 1 | 75 |
| MIMAT0014561 | tgu-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0014424 | cqu-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0014207 | aae-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0014132 | api-miR-184a | 3 | __...... | 8 | 75 |
| MIMAT0013912 | ssc-miR-208b | 3 | ......__ | 8 | 75 |
| MIMAT0012900 | eca-miR-208b | 3 | ......__ | 8 | 75 |
| MIMAT0012899 | eca-miR-208a | 3 | ......__ | 8 | 75 |
| MIMAT0012894 | eca-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0012689 | isc-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0011421 | sme-miR-2200-5p | 3 | ......__ | 8 | 75 |
| MIMAT0009869 | cfa-miR-208b | 3 | ......__ | 8 | 75 |
| MIMAT0009868 | cfa-miR-208a | 3 | ......__ | 8 | 75 |
| MIMAT0009842 | cfa-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0009671 | spu-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0009633 | sko-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0009585 | lgi-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0009531 | cte-miR-184b | 3 | __...... | 8 | 75 |
| MIMAT0009530 | cte-miR-184a | 3 | __...... | 8 | 75 |
| MIMAT0009488 | bfl-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0009262 | bta-miR-208b | 3 | ......__ | 8 | 75 |
| MIMAT0009261 | bta-miR-208a | 3 | ......__ | 8 | 75 |
| MIMAT0009246 | bta-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0009122 | dya-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008989 | dwi-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008949 | dvi-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008904 | dsi-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008822 | dse-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008701 | dpe-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008674 | dmo-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008567 | dgr-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008512 | der-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008436 | dan-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008374 | tca-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0008068 | ptr-miR-208b | 3 | ......__ | 8 | 75 |
| MIMAT0008067 | ptr-miR-208a | 3 | ......__ | 8 | 75 |
| MIMAT0006239 | mml-miR-208b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006238 | mml-miR-208a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006218 | mml-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0006108 | cin-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0007045 | oan-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0006921 | oan-miR-208-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005365 | tae-miR1130a | 8 | __...... | 3 | 75 |
| MIMAT0005334 | rno-miR-743a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0005142 | ppt-miR1035 | 6 | ......__ | 1 | 75 |
| MIMAT0004960 | hsa-miR-208b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004939 | mmu-miR-208b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004129 | mdo-miR-208a | 3 | ......__ | 8 | 75 |
| MIMAT0004119 | mdo-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0004053 | osa-miR812e | 1 | __...... | 6 | 75 |
| MIMAT0004052 | osa-miR812d | 1 | __...... | 6 | 75 |
| MIMAT0004051 | osa-miR812c | 1 | __...... | 6 | 75 |
| MIMAT0004050 | osa-miR812b | 1 | __...... | 6 | 75 |
| MIMAT0004049 | osa-miR812a | 1 | __...... | 6 | 75 |
| MIMAT0004015 | sme-miR-748-3p | 3 | __...... | 8 | 75 |
| MIMAT0004000 | sme-miR-184-3p | 1 | __...... | 6 | 75 |
| MIMAT0003698 | xtr-miR-208 | 3 | ......__ | 8 | 75 |
| MIMAT0003613 | xtr-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0003767 | dre-miR-736 | 3 | ......__ | 8 | 75 |
| MIMAT0002927 | tni-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0002926 | fru-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0002303 | mne-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0002302 | ppy-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0002301 | ptr-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0026560 | mml-miR-200c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0002127 | ssc-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0001853 | dre-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0001504 | aga-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0001476 | ame-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0001232 | dps-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0001158 | gga-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0000880 | rno-miR-208a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017150 | rno-miR-200c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000861 | rno-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0004663 | mmu-miR-200c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004657 | hsa-miR-200c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000520 | mmu-miR-208a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000454 | hsa-miR-184 | 3 | __...... | 8 | 75 |
| MIMAT0000331 | dme-miR-184-3p | 3 | __...... | 8 | 75 |
| MIMAT0020332 | cel-miR-236-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000241 | hsa-miR-208a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000213 | mmu-miR-184-3p | 3 | __...... | 8 | 75 |
