| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagagaa | 7 | ||
| MIMAT0034044 | gra-miR8672 | 1 | ....... | 7 | 100 |
| MIMAT0034027 | gra-miR7504c | 1 | ....... | 7 | 100 |
| MIMAT0027519 | hsa-miR-6809-3p | 8 | ....... | 2 | 100 |
| MIMAT0025727 | gga-miR-6631-5p | 2 | ....... | 8 | 100 |
| MIMAT0023542 | ame-miR-6001-3p | 7 | ....... | 1 | 100 |
| MIMAT0021675 | gma-miR4413b | 2 | ....... | 8 | 100 |
| MIMAT0019891 | hsa-miR-4753-3p | 7 | ....... | 1 | 100 |
| MIMAT0018338 | gma-miR4413a | 1 | ....... | 7 | 100 |
| MIMAT0018200 | hsa-miR-3925-5p | 1 | ....... | 7 | 100 |
| MIMAT0014061 | osa-miR2930 | 7 | ....... | 1 | 100 |
| MIMAT0015347 | zma-miR395o-5p | 8 | ....... | 2 | 100 |
| MIMAT0010059 | osa-miR2097-3p | 7 | ....... | 1 | 100 |
| MIMAT0005534 | mcmv-miR-m01-2-5p | 2 | ....... | 8 | 100 |
| MIMAT0037004 | ssc-miR-9787-3p | 1 | _...... | 6 | 85 |
| MIMAT0034130 | gra-miR8730 | 3 | ......_ | 8 | 85 |
| MIMAT0034059 | gra-miR8686 | 1 | _...... | 6 | 85 |
| MIMAT0033872 | atr-miR8586 | 8 | _...... | 3 | 85 |
| MIMAT0033865 | atr-miR8581 | 3 | _...... | 8 | 85 |
| MIMAT0033702 | pxy-miR-8494-5p | 7 | _...... | 2 | 85 |
| MIMAT0033136 | ppc-miR-8306-5p | 8 | ......_ | 3 | 85 |
| MIMAT0032791 | cel-miR-8189-5p | 6 | ......_ | 1 | 85 |
| MIMAT0031389 | aly-miR173b-3p | 8 | _...... | 3 | 85 |
| MIMAT0030508 | prd-miR-46-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030379 | ptc-miR7817b | 6 | ......_ | 1 | 85 |
| MIMAT0030251 | bdi-miR7754-3p | 6 | _...... | 1 | 85 |
| MIMAT0029835 | mmu-miR-7664-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029794 | mmu-miR-7646-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029122 | hcmv-miR-UL59 | 7 | _...... | 2 | 85 |
| MIMAT0029115 | gga-miR-7480-3p | 6 | _...... | 1 | 85 |
| MIMAT0029100 | gga-miR-7473-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028961 | oan-miR-7407-3p | 7 | _...... | 2 | 85 |
| MIMAT0028410 | mmu-miR-7221-5p | 8 | ......_ | 3 | 85 |
| MIMAT0026068 | mdm-miR169f | 3 | ......_ | 8 | 85 |
| MIMAT0026067 | mdm-miR169e | 3 | ......_ | 8 | 85 |
| MIMAT0028100 | ddi-miR-7097 | 6 | _...... | 1 | 85 |
| MIMAT0027961 | mmu-miR-7028-3p | 8 | _...... | 3 | 85 |
| MIMAT0027693 | mmu-miR-6896-3p | 7 | _...... | 2 | 85 |
| MIMAT0027647 | hsa-miR-6873-3p | 6 | _...... | 1 | 85 |
| MIMAT0027612 | hsa-miR-6856-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027567 | hsa-miR-6833-3p | 7 | _...... | 2 | 85 |
| MIMAT0025487 | hsa-miR-6515-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025224 | ptc-miR6462d | 6 | ......_ | 1 | 85 |
| MIMAT0025206 | ptc-miR6462c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0025204 | ptc-miR6462b | 6 | ......_ | 1 | 85 |
| MIMAT0025188 | ptc-miR6462a | 6 | ......_ | 1 | 85 |
| MIMAT0023569 | tca-miR-6014-5p | 8 | ......_ | 3 | 85 |
| MIMAT0023130 | mtr-miR5750 | 1 | ......_ | 6 | 85 |
| MIMAT0023111 | tur-miR-5738-3p | 8 | _...... | 3 | 85 |
| MIMAT0023046 | tur-miR-281-5p | 1 | ......_ | 6 | 85 |
| MIMAT0022401 | ath-miR5640 | 3 | _...... | 8 | 85 |
| MIMAT0022334 | cin-miR-5604-3p | 7 | _...... | 2 | 85 |
| MIMAT0022313 | cel-miR-5595-5p | 6 | ......_ | 1 | 85 |
| MIMAT0022098 | aca-miR-5465 | 1 | _...... | 6 | 85 |
| MIMAT0022012 | aca-miR-5402-5p | 8 | _...... | 3 | 85 |
| MIMAT0021611 | gma-miR5373 | 6 | ......_ | 1 | 85 |
| MIMAT0021457 | asu-miR-46-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021186 | mtr-miR5227 | 3 | ......_ | 8 | 85 |
| MIMAT0020754 | bdi-miR529-5p | 3 | ......_ | 8 | 85 |
| MIMAT0021008 | gma-miR1513b | 3 | _...... | 8 | 85 |
| MIMAT0020186 | dme-miR-4963-3p | 7 | _...... | 2 | 85 |
| MIMAT0020155 | dme-miR-4945-5p | 8 | _...... | 3 | 85 |
| MIMAT0020129 | cel-miR-4923a | 3 | ......_ | 8 | 85 |
| MIMAT0020056 | sko-miR-4830d-5p | 6 | ......_ | 1 | 85 |
| MIMAT0019920 | hsa-miR-4768-5p | 7 | _...... | 2 | 85 |
| MIMAT0018373 | far-miR529 | 3 | ......_ | 8 | 85 |
| MIMAT0018193 | hsa-miR-3919 | 3 | _...... | 8 | 85 |
| MIMAT0018512 | ame-miR-3717 | 3 | _...... | 8 | 85 |
| MIMAT0018134 | pab-miR3702 | 8 | ......_ | 3 | 85 |
| MIMAT0016863 | hsa-miR-4311 | 3 | ......_ | 8 | 85 |
| MIMAT0016316 | sja-miR-3507 | 1 | _...... | 6 | 85 |
| MIMAT0016140 | ppy-miR-942 | 8 | _...... | 3 | 85 |
| MIMAT0017532 | aly-miR173a-3p | 8 | _...... | 3 | 85 |
| MIMAT0017412 | aly-miR156h-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015444 | bmo-miR-3260 | 8 | ......_ | 3 | 85 |
| MIMAT0015422 | bmo-miR-3239 | 3 | _...... | 8 | 85 |
| MIMAT0014985 | hsa-miR-3123 | 2 | _...... | 7 | 85 |
| MIMAT0014358 | cqu-miR-281-5p | 1 | ......_ | 6 | 85 |
| MIMAT0014231 | aae-miR-281-5p | 1 | ......_ | 6 | 85 |
| MIMAT0014030 | zma-miR529-5p | 3 | ......_ | 8 | 85 |
| MIMAT0015346 | zma-miR395n-5p | 7 | _...... | 2 | 85 |
| MIMAT0013715 | bmo-miR-2806 | 7 | _...... | 2 | 85 |
| MIMAT0012592 | aqc-miR529 | 3 | ......_ | 8 | 85 |
| MIMAT0011597 | crm-miR-46-5p | 1 | ......_ | 6 | 85 |
| MIMAT0010140 | lmi-miR-281-5p | 1 | ......_ | 6 | 85 |
| MIMAT0011162 | hsa-miR-2117 | 8 | _...... | 3 | 85 |
| MIMAT0010064 | osa-miR2100-5p | 6 | _...... | 1 | 85 |
| MIMAT0009060 | dya-miR-281-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009190 | dya-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008994 | dwi-miR-281-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009189 | dwi-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032090 | dvi-miR-6-1-5p | 1 | _...... | 6 | 85 |
| MIMAT0008926 | dvi-miR-281-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032070 | dvi-miR-6-3-5p | 1 | _...... | 6 | 85 |
| MIMAT0009188 | dvi-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008905 | dsi-miR-281-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008782 | dse-miR-281-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009187 | dse-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009186 | dpe-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008727 | dpe-miR-281-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009185 | dmo-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008641 | dmo-miR-281-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009184 | dgr-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008587 | dgr-miR-281-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008501 | der-miR-281-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009183 | der-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008428 | dan-miR-281-1-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009182 | dan-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008384 | tca-miR-281-5p | 1 | ......_ | 6 | 85 |
| MIMAT0008348 | ptr-miR-942 | 8 | _...... | 3 | 85 |
| MIMAT0007978 | ptr-miR-1253 | 1 | _...... | 6 | 85 |
| MIMAT0007904 | bmo-miR-281-5p | 1 | ......_ | 6 | 85 |
| MIMAT0007853 | ath-miR1886.1 | 3 | _...... | 8 | 85 |
| MIMAT0006542 | mml-miR-942-5p | 7 | _...... | 2 | 85 |
| MIMAT0007712 | gga-miR-1756b | 6 | _...... | 1 | 85 |
| MIMAT0007443 | gga-miR-1582 | 3 | ......_ | 8 | 85 |
| MIMAT0007371 | gma-miR1513a-5p | 3 | _...... | 8 | 85 |
| MIMAT0005904 | hsa-miR-1253 | 1 | _...... | 6 | 85 |
| MIMAT0005165 | ppt-miR1049 | 8 | ......_ | 3 | 85 |
| MIMAT0005105 | ppt-miR1023b-3p | 1 | _...... | 6 | 85 |
| MIMAT0005103 | ppt-miR1023a-3p | 1 | _...... | 6 | 85 |
| MIMAT0005060 | ppt-miR529g | 3 | ......_ | 8 | 85 |
| MIMAT0005059 | ppt-miR529f | 3 | ......_ | 8 | 85 |
| MIMAT0005058 | ppt-miR529e | 3 | ......_ | 8 | 85 |
| MIMAT0005057 | ppt-miR529d | 3 | ......_ | 8 | 85 |
| MIMAT0005056 | ppt-miR529c | 3 | ......_ | 8 | 85 |
| MIMAT0005055 | ppt-miR529b | 3 | ......_ | 8 | 85 |
| MIMAT0005054 | ppt-miR529a | 3 | ......_ | 8 | 85 |
| MIMAT0005015 | osa-miR529b | 3 | ......_ | 8 | 85 |
| MIMAT0004985 | hsa-miR-942-5p | 8 | _...... | 3 | 85 |
| MIMAT0012100 | sme-miR-12-3p | 8 | ......_ | 3 | 85 |
| MIMAT0003496 | mmu-miR-706 | 1 | _...... | 6 | 85 |
| MIMAT0000349 | dme-miR-281-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015119 | cel-miR-247-5p | 2 | _...... | 7 | 85 |
| MIMAT0015097 | cel-miR-47-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015096 | cel-miR-46-5p | 1 | ......_ | 6 | 85 |
