| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagagtat | 8 | ||
| MIMAT0029129 | ghr-miR7487 | 8 | ........ | 1 | 100 |
| MIMAT0034137 | gra-miR8732 | 2 | ......._ | 8 | 87 |
| MIMAT0025307 | prv-miR-LLT4 | 1 | _....... | 7 | 87 |
| MIMAT0027117 | mml-miR-4796-5p | 8 | _....... | 2 | 87 |
| MIMAT0022309 | cel-miR-5594-5p | 1 | ......._ | 7 | 87 |
| MIMAT0022201 | mtr-miR5555-5p | 2 | ......._ | 8 | 87 |
| MIMAT0021376 | isc-miR-5306 | 1 | _....... | 7 | 87 |
| MIMAT0015397 | bmo-miR-3217 | 2 | _....... | 8 | 87 |
| MIMAT0012495 | dsi-miR-960 | 1 | _....... | 7 | 87 |
| MIMAT0009766 | nve-miR-2024e-5p | 1 | _....... | 7 | 87 |
| MIMAT0035385 | nve-miR-9426 | 1 | ......t. | 8 | 87 |
| MIMAT0026065 | mdm-miR7127b | 8 | .t...... | 1 | 87 |
| MIMAT0026064 | mdm-miR7127a | 8 | .t...... | 1 | 87 |
| MIMAT0017393 | bta-miR-2284w | 1 | ......t. | 8 | 87 |
| MIMAT0036607 | tch-miR-503 | 1 | __...... | 6 | 75 |
| MIMAT0036258 | chi-miR-496-3p | 2 | __...... | 7 | 75 |
| MIMAT0035945 | chi-miR-130b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035213 | dme-miR-9375-5p | 3 | __...... | 8 | 75 |
| MIMAT0035127 | efu-miR-503 | 3 | __...... | 8 | 75 |
| MIMAT0034217 | gra-miR7484j | 8 | _......_ | 3 | 75 |
| MIMAT0033948 | atr-miR828 | 8 | __...... | 3 | 75 |
| MIMAT0033452 | str-miR-8392-5p | 7 | ......__ | 2 | 75 |
| MIMAT0033261 | ppc-miR-8364e-3p | 3 | _......_ | 8 | 75 |
| MIMAT0033177 | ppc-miR-8364a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0032321 | ssa-miR-130a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030926 | stu-miR8025-5p | 8 | __...... | 3 | 75 |
| MIMAT0029478 | ipu-miR-223 | 1 | __...... | 6 | 75 |
| MIMAT0028884 | mdo-miR-7393-5p | 2 | __...... | 7 | 75 |
| MIMAT0028699 | mdo-miR-7344-3p | 6 | __...... | 1 | 75 |
| MIMAT0028523 | mdo-miR-7274-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028254 | mml-miR-548g-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026336 | bma-miR-5838 | 2 | __...... | 7 | 75 |
| MIMAT0028095 | mmu-miR-7094-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028025 | mmu-miR-7060-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027789 | mmu-miR-6944-3p | 8 | ......__ | 3 | 75 |
| MIMAT0025800 | gga-miR-6694-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025558 | bta-miR-503-3p | 2 | __...... | 7 | 75 |
| MIMAT0025553 | bta-miR-6524 | 7 | _......_ | 2 | 75 |
| MIMAT0025538 | bta-miR-6520 | 3 | __...... | 8 | 75 |
| MIMAT0032137 | sma-miR-36a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0024936 | hme-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0024466 | mse-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0024223 | ggo-miR-496 | 2 | __...... | 7 | 75 |
| MIMAT0023756 | cgr-miR-130b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0023585 | nta-miR6020a-3p | 8 | __...... | 3 | 75 |
| MIMAT0023544 | ame-miR-6002-3p | 3 | _......_ | 8 | 75 |
| MIMAT0023102 | tur-miR-12a-5p | 2 | __...... | 7 | 75 |
| MIMAT0023044 | tur-miR-12b-5p | 2 | __...... | 7 | 75 |
| MIMAT0022152 | osa-miR5518 | 6 | __...... | 1 | 75 |
| MIMAT0021742 | aca-miR-130b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020203 | dme-miR-4974-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020039 | sko-miR-4829b | 8 | _......_ | 3 | 75 |
| MIMAT0020038 | sko-miR-4829a | 8 | _......_ | 3 | 75 |
| MIMAT0019995 | cel-miR-4810a | 2 | __...... | 7 | 75 |
| MIMAT0019619 | pma-miR-4586 | 2 | ......__ | 7 | 75 |
| MIMAT0019320 | oar-miR-496-3p | 2 | __...... | 7 | 75 |
| MIMAT0018420 | nlo-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0018025 | vvi-miR477b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017909 | aly-miR4221 | 1 | ......__ | 6 | 75 |
| MIMAT0015917 | ppy-miR-496 | 2 | __...... | 7 | 75 |
| MIMAT0015670 | nvi-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0017738 | ath-miR3434-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014395 | cqu-miR-12-3p | 2 | __...... | 7 | 75 |
| MIMAT0014253 | aae-miR-12-5p | 2 | __...... | 7 | 75 |
| MIMAT0013166 | eca-miR-496 | 2 | __...... | 7 | 75 |
| MIMAT0013676 | bmo-miR-2778b-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013674 | bmo-miR-2778d-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013667 | bmo-miR-2778c-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013665 | bmo-miR-2778a-3p | 2 | _......_ | 7 | 75 |
| MIMAT0013660 | bmo-miR-2776 | 1 | _......_ | 6 | 75 |
| MIMAT0012684 | isc-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0012638 | dpu-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0012388 | dps-miR-2563-5p | 2 | __...... | 7 | 75 |
| MIMAT0012217 | dme-miR-2501-3p | 6 | ......__ | 1 | 75 |
| MIMAT0011843 | bta-miR-2319b | 6 | _......_ | 1 | 75 |
| MIMAT0011842 | bta-miR-2319a | 7 | _......_ | 2 | 75 |
| MIMAT0011805 | bta-miR-2297 | 7 | ......__ | 2 | 75 |
| MIMAT0011251 | sme-miR-2158-5p | 2 | __...... | 7 | 75 |
| MIMAT0011250 | sme-miR-2157-5p | 2 | __...... | 7 | 75 |
| MIMAT0009906 | cfa-miR-496 | 2 | __...... | 7 | 75 |
| MIMAT0009564 | lgi-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0009512 | cte-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0009151 | bmo-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0009336 | bta-miR-496 | 2 | __...... | 7 | 75 |
| MIMAT0009017 | dwi-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0008911 | dvi-miR-12-5p | 2 | __...... | 7 | 75 |
| MIMAT0008852 | dsi-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0008766 | dse-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0008762 | dpe-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0008630 | dmo-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0008560 | dgr-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0008531 | der-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0008418 | dan-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0008358 | tca-miR-12-5p | 2 | __...... | 7 | 75 |
| MIMAT0008170 | ptr-miR-496 | 2 | __...... | 7 | 75 |
| MIMAT0026890 | mml-miR-503-3p | 2 | __...... | 7 | 75 |
| MIMAT0006358 | mml-miR-496 | 2 | __...... | 7 | 75 |
| MIMAT0026815 | mml-miR-130b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026748 | mml-miR-514a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005527 | aga-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0005374 | tae-miR1139 | 1 | _......_ | 6 | 75 |
| MIMAT0005275 | smo-miR1103-5p | 1 | ......__ | 6 | 75 |
| MIMAT0005474 | dme-miR-960-5p | 2 | __...... | 7 | 75 |
| MIMAT0003975 | sme-miR-12-5p | 2 | __...... | 7 | 75 |
| MIMAT0003738 | mmu-miR-496a-3p | 2 | __...... | 7 | 75 |
| MIMAT0017224 | rno-miR-503-3p | 2 | __...... | 7 | 75 |
| MIMAT0004790 | mmu-miR-503-3p | 1 | __...... | 6 | 75 |
| MIMAT0022702 | hsa-miR-514a-5p | 6 | _......_ | 1 | 75 |
| MIMAT0002818 | hsa-miR-496 | 2 | __...... | 7 | 75 |
| MIMAT0001472 | ame-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0001216 | dps-miR-12 | 2 | __...... | 7 | 75 |
| MIMAT0017122 | rno-miR-130b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004680 | hsa-miR-130b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000610 | rno-miR-352 | 1 | _......_ | 6 | 75 |
| MIMAT0004583 | mmu-miR-130b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000117 | dme-miR-12-5p | 2 | __...... | 7 | 75 |
