| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagcaggc | 8 | ||
| MIMAT0003447 | rlcv-miR-rL1-16-5p | 1 | ........ | 8 | 100 |
| MIMAT0035316 | gsa-miR-153-5p | 7 | ......._ | 1 | 87 |
| MIMAT0034931 | efu-miR-370 | 7 | _....... | 1 | 87 |
| MIMAT0032554 | ssa-miR-24a-4-5p | 8 | _....... | 2 | 87 |
| MIMAT0025638 | gga-miR-6566-3p | 2 | _....... | 8 | 87 |
| MIMAT0025373 | ssc-miR-370 | 7 | _....... | 1 | 87 |
| MIMAT0024182 | ggo-miR-370 | 7 | _....... | 1 | 87 |
| MIMAT0019779 | hsa-miR-4690-5p | 2 | _....... | 8 | 87 |
| MIMAT0019244 | oar-miR-370-3p | 7 | _....... | 1 | 87 |
| MIMAT0017967 | ssc-miR-1271 | 8 | _....... | 2 | 87 |
| MIMAT0016453 | cin-miR-4001d-3p | 7 | _....... | 1 | 87 |
| MIMAT0015857 | ppy-miR-370 | 7 | _....... | 1 | 87 |
| MIMAT0014494 | tgu-miR-2984-5p | 8 | _....... | 2 | 87 |
| MIMAT0013142 | eca-miR-370 | 7 | _....... | 1 | 87 |
| MIMAT0011793 | bta-miR-2286 | 2 | ......._ | 8 | 87 |
| MIMAT0009889 | cfa-miR-370 | 7 | _....... | 1 | 87 |
| MIMAT0009300 | bta-miR-370 | 7 | _....... | 1 | 87 |
| MIMAT0008120 | ptr-miR-370 | 7 | _....... | 1 | 87 |
| MIMAT0006295 | mml-miR-370-3p | 7 | _....... | 1 | 87 |
| MIMAT0003719 | ebv-miR-BART20-5p | 2 | _....... | 8 | 87 |
| MIMAT0003122 | rno-miR-370-3p | 7 | _....... | 1 | 87 |
| MIMAT0001095 | mmu-miR-370-3p | 7 | _....... | 1 | 87 |
| MIMAT0000722 | hsa-miR-370-3p | 7 | _....... | 1 | 87 |
| MIMAT0027522 | hsa-miR-6811-5p | 1 | .t...... | 8 | 87 |
| MIMAT0023510 | hhv6b-miR-Ro6-1-5p | 1 | ......t. | 8 | 87 |
| MIMAT0035565 | dvi-miR-252-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035138 | efu-miR-9352 | 8 | ......__ | 3 | 75 |
| MIMAT0034564 | eca-miR-9022 | 2 | _......_ | 7 | 75 |
| MIMAT0034065 | gra-miR8692 | 1 | _......_ | 6 | 75 |
| MIMAT0033355 | str-miR-86-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032645 | ssa-miR-456-5p | 1 | __...... | 6 | 75 |
| MIMAT0032403 | ssa-miR-15e-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031632 | bbe-miR-2067-3p | 1 | ......__ | 6 | 75 |
| MIMAT0031630 | bbe-miR-2066-5p | 1 | ......__ | 6 | 75 |
| MIMAT0031628 | bbe-miR-2064-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030319 | bdi-miR7782-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030083 | bdi-miR159b-5p.3 | 8 | ......__ | 3 | 75 |
| MIMAT0029875 | mmu-miR-7680-3p | 7 | ......__ | 2 | 75 |
| MIMAT0029832 | mmu-miR-7663-5p | 7 | ......__ | 2 | 75 |
| MIMAT0029564 | ipu-miR-7565 | 8 | _......_ | 3 | 75 |
| MIMAT0029515 | ipu-miR-457a | 1 | ......__ | 6 | 75 |
| MIMAT0029466 | ipu-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0031144 | aja-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0029039 | gga-miR-7442-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027939 | mmu-miR-7017-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027927 | mmu-miR-7011-3p | 7 | ......__ | 2 | 75 |
| MIMAT0027787 | mmu-miR-6943-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027689 | hsa-miR-6894-3p | 8 | __...... | 3 | 75 |
| MIMAT0027687 | hsa-miR-6893-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027578 | hsa-miR-6838-5p | 1 | ......__ | 6 | 75 |
| MIMAT0027484 | hsa-miR-6792-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025847 | hsa-miR-6511b-5p | 3 | __...... | 8 | 75 |
| MIMAT0025605 | gga-miR-6550-5p | 2 | ......__ | 7 | 75 |
| MIMAT0025476 | hsa-miR-6510-5p | 2 | _......_ | 7 | 75 |
| MIMAT0025093 | mmu-miR-6350 | 2 | _......_ | 7 | 75 |
| MIMAT0025089 | mmu-miR-6346 | 2 | _......_ | 7 | 75 |
| MIMAT0025067 | rno-miR-6328 | 8 | __...... | 3 | 75 |
| MIMAT0024782 | hsa-miR-6165 | 2 | _......_ | 7 | 75 |
| MIMAT0024625 | mml-miR-6132 | 1 | _......_ | 6 | 75 |
| MIMAT0024616 | hsa-miR-6132 | 1 | _......_ | 6 | 75 |
| MIMAT0024606 | ptr-miR-6132 | 1 | _......_ | 6 | 75 |
| MIMAT0027108 | mml-miR-1271-3p | 8 | __...... | 3 | 75 |
| MIMAT0023747 | cgr-miR-1271 | 8 | __...... | 3 | 75 |
| MIMAT0023419 | hco-miR-5924b | 8 | ......__ | 3 | 75 |
| MIMAT0023404 | hco-miR-5924a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0023285 | osa-miR5813 | 1 | ......__ | 6 | 75 |
| MIMAT0021872 | aca-miR-214-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021510 | asu-miR-252-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021214 | mtr-miR5229b | 3 | _......_ | 8 | 75 |
| MIMAT0021213 | mtr-miR5229a | 3 | _......_ | 8 | 75 |
| MIMAT0020052 | sko-miR-4835-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019912 | hsa-miR-4763-5p | 7 | __...... | 2 | 75 |
| MIMAT0018340 | gma-miR159d | 8 | ......__ | 3 | 75 |
| MIMAT0018805 | tca-miR-252a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0018121 | hsa-miR-3692-5p | 6 | _......_ | 1 | 75 |
| MIMAT0018087 | hsa-miR-3665 | 1 | _......_ | 6 | 75 |
| MIMAT0017999 | hsa-miR-3619-5p | 3 | _......_ | 8 | 75 |
| MIMAT0016897 | hsa-miR-4269 | 1 | __...... | 6 | 75 |
| MIMAT0016612 | cin-miR-4062-5p | 7 | __...... | 2 | 75 |
| MIMAT0016038 | ppy-miR-596 | 8 | __...... | 3 | 75 |
| MIMAT0014942 | mmu-miR-3105-3p | 7 | ......__ | 2 | 75 |
| MIMAT0014603 | tgu-miR-214-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014477 | tgu-miR-2968 | 8 | ......__ | 3 | 75 |
| MIMAT0026964 | tgu-miR-456-5p | 1 | __...... | 6 | 75 |
| MIMAT0014374 | cqu-miR-252-3p | 6 | _......_ | 1 | 75 |
| MIMAT0015328 | zma-miR169q-3p | 2 | __...... | 7 | 75 |
| MIMAT0015325 | zma-miR169n-3p | 2 | __...... | 7 | 75 |
| MIMAT0013853 | bta-miR-2895 | 6 | _......_ | 1 | 75 |
| MIMAT0012963 | eca-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0012923 | eca-miR-761 | 3 | _......_ | 8 | 75 |
| MIMAT0012853 | rno-miR-761 | 3 | _......_ | 8 | 75 |
| MIMAT0012817 | ptr-miR-761 | 3 | _......_ | 8 | 75 |
| MIMAT0012807 | ptr-miR-596 | 8 | __...... | 3 | 75 |
| MIMAT0012793 | mml-miR-761 | 3 | _......_ | 8 | 75 |
| MIMAT0012768 | mdo-miR-761 | 3 | _......_ | 8 | 75 |
| MIMAT0012466 | dsi-miR-252-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012310 | dps-miR-2522a | 2 | ......__ | 7 | 75 |
| MIMAT0012262 | dps-miR-252-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012017 | bta-miR-2442 | 3 | _......_ | 8 | 75 |
| MIMAT0011889 | bta-miR-2353 | 8 | __...... | 3 | 75 |
| MIMAT0011205 | gga-miR-2129 | 2 | _......_ | 7 | 75 |
| MIMAT0015293 | bmo-miR-252-3p | 6 | _......_ | 1 | 75 |
| MIMAT0009995 | bfl-miR-2067 | 1 | ......__ | 6 | 75 |
| MIMAT0009994 | bfl-miR-2066 | 1 | ......__ | 6 | 75 |
| MIMAT0009990 | bfl-miR-2064 | 1 | ......__ | 6 | 75 |
| MIMAT0009986 | bfl-miR-2060 | 3 | _......_ | 8 | 75 |
| MIMAT0009936 | cfa-miR-761 | 3 | _......_ | 8 | 75 |
| MIMAT0009847 | cfa-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0009373 | bta-miR-761 | 3 | _......_ | 8 | 75 |
| MIMAT0009349 | bta-miR-562 | 2 | ......__ | 7 | 75 |
| MIMAT0008299 | ptr-miR-646 | 1 | ......__ | 6 | 75 |
| MIMAT0007751 | gga-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0026860 | mml-miR-374b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007685 | gga-miR-1774 | 8 | _......_ | 3 | 75 |
| MIMAT0007672 | gga-miR-1764-3p | 8 | ......__ | 3 | 75 |
| MIMAT0007491 | gga-miR-1623 | 1 | __...... | 6 | 75 |
| MIMAT0007413 | gga-miR-1556 | 2 | __...... | 7 | 75 |
| MIMAT0007380 | gma-miR1536 | 1 | ......__ | 6 | 75 |
| MIMAT0015252 | cin-miR-34-3p | 8 | ......__ | 3 | 75 |
| MIMAT0006047 | odi-miR-1494 | 1 | ......__ | 6 | 75 |
| MIMAT0007305 | oan-miR-1421ai-5p | 1 | _......_ | 6 | 75 |
| MIMAT0007270 | oan-miR-1415 | 7 | ......__ | 2 | 75 |
| MIMAT0007245 | oan-miR-1421z-5p | 1 | _......_ | 6 | 75 |
| MIMAT0007171 | oan-miR-214-3p | 3 | _......_ | 8 | 75 |
| MIMAT0020896 | dme-miR-252-3p | 7 | _......_ | 2 | 75 |
| MIMAT0004130 | mdo-miR-214-3p | 3 | _......_ | 8 | 75 |
| MIMAT0003825 | bta-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0003627 | xtr-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0003764 | dre-miR-15c | 1 | ......__ | 6 | 75 |
| MIMAT0003467 | mmu-miR-688 | 3 | __...... | 8 | 75 |
| MIMAT0003461 | mmu-miR-683 | 6 | _......_ | 1 | 75 |
| MIMAT0003893 | mmu-miR-761 | 3 | _......_ | 8 | 75 |
| MIMAT0010364 | hsa-miR-761 | 3 | _......_ | 8 | 75 |
| MIMAT0003316 | hsa-miR-646 | 1 | ......__ | 6 | 75 |
| MIMAT0003264 | hsa-miR-596 | 8 | __...... | 3 | 75 |
| MIMAT0003027 | tni-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0003026 | fru-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0026593 | mml-miR-15a-3p | 1 | __...... | 6 | 75 |
| MIMAT0002557 | mne-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0002556 | sla-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0002555 | mml-miR-214-3p | 3 | _......_ | 8 | 75 |
| MIMAT0002554 | ptr-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0002553 | ppy-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0002552 | ppa-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0002551 | age-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0002550 | ggo-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0002147 | ssc-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0001884 | dre-miR-457b-5p | 1 | ......__ | 6 | 75 |
| MIMAT0001883 | dre-miR-457a | 1 | ......__ | 6 | 75 |
| MIMAT0001283 | dre-miR-214 | 3 | _......_ | 8 | 75 |
| MIMAT0000885 | rno-miR-214-3p | 3 | _......_ | 8 | 75 |
| MIMAT0000661 | mmu-miR-214-3p | 3 | _......_ | 8 | 75 |
| MIMAT0015118 | cel-miR-244-3p | 8 | ......__ | 3 | 75 |
| MIMAT0000271 | hsa-miR-214-3p | 3 | _......_ | 8 | 75 |
