| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaggacc | 7 | ||
| MIMAT0035643 | dvi-miR-9549-3p | 1 | ....... | 7 | 100 |
| MIMAT0028841 | mdo-miR-7386h-3p | 2 | ....... | 8 | 100 |
| MIMAT0027824 | mmu-miR-6962-5p | 1 | ....... | 7 | 100 |
| MIMAT0027533 | hsa-miR-6816-3p | 2 | ....... | 8 | 100 |
| MIMAT0025574 | bta-miR-2285q | 1 | ....... | 7 | 100 |
| MIMAT0016638 | cin-miR-4075-5p | 7 | ....... | 1 | 100 |
| MIMAT0005412 | cre-miR1160.3 | 1 | ....... | 7 | 100 |
| MIMAT0037047 | ssc-miR-9829-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035420 | nve-miR-9459 | 1 | ......_ | 6 | 85 |
| MIMAT0034733 | eca-miR-1543 | 8 | _...... | 3 | 85 |
| MIMAT0034724 | eca-miR-9148 | 3 | _...... | 8 | 85 |
| MIMAT0034641 | eca-miR-9095 | 3 | ......_ | 8 | 85 |
| MIMAT0034620 | eca-miR-9075 | 3 | _...... | 8 | 85 |
| MIMAT0033876 | atr-miR8589 | 1 | _...... | 6 | 85 |
| MIMAT0030906 | stu-miR8010 | 3 | _...... | 8 | 85 |
| MIMAT0030627 | prd-miR-7907a-3p | 2 | _...... | 7 | 85 |
| MIMAT0029650 | cbn-miR-7579 | 3 | _...... | 8 | 85 |
| MIMAT0029610 | crm-miR-7579 | 3 | _...... | 8 | 85 |
| MIMAT0029580 | cbr-miR-7579 | 3 | _...... | 8 | 85 |
| MIMAT0028725 | mdo-miR-7356-3p | 8 | _...... | 3 | 85 |
| MIMAT0028482 | mdo-miR-7258-5p | 3 | ......_ | 8 | 85 |
| MIMAT0028445 | mmu-miR-7238-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028308 | mml-miR-7181-5p | 8 | _...... | 3 | 85 |
| MIMAT0027699 | mmu-miR-6899-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025697 | gga-miR-6603-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025647 | gga-miR-6570-5p | 1 | _...... | 6 | 85 |
| MIMAT0024754 | nta-miR6153 | 2 | _...... | 7 | 85 |
| MIMAT0023224 | gma-miR2111d | 6 | ......_ | 1 | 85 |
| MIMAT0022457 | gma-miR2111a | 6 | ......_ | 1 | 85 |
| MIMAT0020567 | tae-miR5085 | 1 | ......_ | 6 | 85 |
| MIMAT0019888 | hsa-miR-4751 | 3 | _...... | 8 | 85 |
| MIMAT0018269 | gma-miR4368b | 1 | ......_ | 6 | 85 |
| MIMAT0016481 | cin-miR-4006e-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016433 | cin-miR-4000b-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016429 | cin-miR-4000d-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016367 | lja-miR2111-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015913 | ppy-miR-492 | 1 | _...... | 6 | 85 |
| MIMAT0017629 | aly-miR844-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012509 | dsi-miR-2577 | 1 | _...... | 6 | 85 |
| MIMAT0009397 | mmu-miR-1933-3p | 3 | _...... | 8 | 85 |
| MIMAT0008167 | ptr-miR-492 | 1 | _...... | 6 | 85 |
| MIMAT0006354 | mml-miR-492 | 1 | _...... | 6 | 85 |
| MIMAT0007657 | gga-miR-1750 | 3 | _...... | 8 | 85 |
| MIMAT0007333 | gga-miR-1456-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014802 | mmu-miR-1264-5p | 7 | _...... | 2 | 85 |
| MIMAT0022710 | hsa-miR-659-5p | 1 | _...... | 6 | 85 |
| MIMAT0002812 | hsa-miR-492 | 1 | _...... | 6 | 85 |
| MIMAT0002102 | ptc-miR481d | 1 | _...... | 6 | 85 |
| MIMAT0002100 | ptc-miR481c | 1 | _...... | 6 | 85 |
| MIMAT0002099 | ptc-miR481b | 1 | _...... | 6 | 85 |
| MIMAT0002098 | ptc-miR481a | 1 | _...... | 6 | 85 |
| MIMAT0017059 | mmu-miR-211-3p | 3 | ......_ | 8 | 85 |
