| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaggcgc | 7 | ||
| MIMAT0036424 | ggo-miR-524-3p | 2 | ....... | 8 | 100 |
| MIMAT0036413 | ggo-miR-525-3p | 2 | ....... | 8 | 100 |
| MIMAT0034673 | eca-miR-9123 | 8 | ....... | 2 | 100 |
| MIMAT0021562 | asu-miR-5352-5p | 1 | ....... | 7 | 100 |
| MIMAT0015983 | ppy-miR-525-3p | 2 | ....... | 8 | 100 |
| MIMAT0015981 | ppy-miR-524-3p | 2 | ....... | 8 | 100 |
| MIMAT0008209 | ptr-miR-525 | 2 | ....... | 8 | 100 |
| MIMAT0008208 | ptr-miR-524 | 2 | ....... | 8 | 100 |
| MIMAT0002850 | hsa-miR-524-3p | 2 | ....... | 8 | 100 |
| MIMAT0002839 | hsa-miR-525-3p | 2 | ....... | 8 | 100 |
| MIMAT0037153 | ata-miR168-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035837 | bra-miR168a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035835 | bra-miR168c-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035833 | bra-miR168b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0035230 | dme-miR-9383-3p | 8 | ......_ | 3 | 85 |
| MIMAT0034524 | eca-miR-8987 | 3 | ......_ | 8 | 85 |
| MIMAT0032874 | ppc-miR-8220-5p | 1 | _...... | 6 | 85 |
| MIMAT0032801 | cel-miR-8194-5p | 8 | _...... | 3 | 85 |
| MIMAT0031401 | mmu-miR-8099 | 3 | ......_ | 8 | 85 |
| MIMAT0030159 | bdi-miR7718-3p | 8 | ......_ | 3 | 85 |
| MIMAT0029792 | mmu-miR-6546-5p | 1 | _...... | 6 | 85 |
| MIMAT0029792 | mmu-miR-6546-5p | 8 | _...... | 3 | 85 |
| MIMAT0031132 | sly-miR168b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028499 | mdo-miR-7265-3p | 2 | _...... | 7 | 85 |
| MIMAT0028171 | dev-miR-D2-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027857 | mmu-miR-6977-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025853 | hsa-miR-6722-5p | 1 | _...... | 6 | 85 |
| MIMAT0025851 | hsa-miR-6720-3p | 7 | _...... | 2 | 85 |
| MIMAT0022236 | mtr-miR168c-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022121 | osa-miR5488 | 3 | ......_ | 8 | 85 |
| MIMAT0021495 | asu-miR-124-5p | 6 | ......_ | 1 | 85 |
| MIMAT0027053 | bdi-miR168-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019018 | hsa-miR-4484 | 3 | ......_ | 8 | 85 |
| MIMAT0018873 | tca-miR-3887-3p | 8 | _...... | 3 | 85 |
| MIMAT0018868 | tca-miR-3885-5p | 1 | ......_ | 6 | 85 |
| MIMAT0016010 | ppy-miR-566 | 8 | _...... | 3 | 85 |
| MIMAT0017573 | aly-miR399b-5p | 8 | _...... | 3 | 85 |
| MIMAT0017482 | aly-miR168a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015082 | hsa-miR-3197 | 3 | _...... | 8 | 85 |
| MIMAT0032094 | dvi-miR-87-5p | 8 | _...... | 3 | 85 |
| MIMAT0008244 | ptr-miR-566 | 8 | _...... | 3 | 85 |
| MIMAT0005403 | cre-miR1154-3p | 6 | ......_ | 1 | 85 |
| MIMAT0026636 | hsa-miR-668-5p | 7 | _...... | 2 | 85 |
| MIMAT0003230 | hsa-miR-566 | 8 | _...... | 3 | 85 |
| MIMAT0002186 | kshv-miR-K12-8-3p | 3 | _...... | 8 | 85 |
| MIMAT0022897 | ptc-miR168b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0022896 | ptc-miR168a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015192 | zma-miR168b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015191 | zma-miR168a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020821 | dme-miR-87-5p | 8 | _...... | 3 | 85 |
| MIMAT0031884 | ath-miR168a-3p | 8 | ......_ | 3 | 85 |
