| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaggtga | 7 | ||
| MIMAT0034046 | gra-miR8675a | 1 | ....... | 7 | 100 |
| MIMAT0027943 | mmu-miR-7019-3p | 7 | ....... | 1 | 100 |
| MIMAT0019636 | pma-miR-4602 | 7 | ....... | 1 | 100 |
| MIMAT0015413 | bmo-miR-3231 | 7 | ....... | 1 | 100 |
| MIMAT0006022 | odi-miR-1471 | 7 | ....... | 1 | 100 |
| MIMAT0007191 | oan-miR-1393 | 7 | ....... | 1 | 100 |
| MIMAT0003437 | rlcv-miR-rL1-8-5p | 2 | ....... | 8 | 100 |
| MIMAT0003413 | ebv-miR-BART5-5p | 2 | ....... | 8 | 100 |
| MIMAT0037056 | ssc-miR-9838-5p | 3 | _...... | 8 | 85 |
| MIMAT0036673 | oha-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0035924 | chi-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0035626 | dvi-miR-9543a-5p | 3 | _...... | 8 | 85 |
| MIMAT0035557 | dvi-miR-1010-3p | 8 | _...... | 3 | 85 |
| MIMAT0034815 | efu-miR-9222 | 6 | ......_ | 1 | 85 |
| MIMAT0034551 | eca-miR-3200 | 6 | ......_ | 1 | 85 |
| MIMAT0034085 | gra-miR8675c | 1 | _...... | 6 | 85 |
| MIMAT0034084 | gra-miR8675b | 1 | _...... | 6 | 85 |
| MIMAT0033650 | sma-miR-8465-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033462 | str-miR-8394-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032310 | ssa-miR-125b-3-3p | 3 | _...... | 8 | 85 |
| MIMAT0032309 | ssa-miR-125b-2-3p | 2 | _...... | 7 | 85 |
| MIMAT0032308 | ssa-miR-125b-1-3p | 3 | _...... | 8 | 85 |
| MIMAT0031734 | bbe-miR-4856a-3p | 1 | _...... | 6 | 85 |
| MIMAT0030816 | prd-miR-7950b-5p | 8 | _...... | 3 | 85 |
| MIMAT0030512 | prd-miR-7878-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030429 | hsa-miR-7854-3p | 3 | _...... | 8 | 85 |
| MIMAT0032186 | pmi-miR-2011-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029823 | mmu-miR-7658-3p | 8 | ......_ | 3 | 85 |
| MIMAT0029666 | cbn-miR-7624 | 3 | _...... | 8 | 85 |
| MIMAT0028818 | mdo-miR-7381-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028531 | mdo-miR-7278-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028455 | mdo-miR-7244-3p | 6 | _...... | 1 | 85 |
| MIMAT0028017 | mmu-miR-7056-3p | 8 | _...... | 3 | 85 |
| MIMAT0027978 | mmu-miR-7037-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027500 | hsa-miR-6800-5p | 3 | _...... | 8 | 85 |
| MIMAT0027465 | hsa-miR-6782-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027431 | hsa-miR-6765-3p | 6 | _...... | 1 | 85 |
| MIMAT0024814 | hvu-miR6189 | 1 | _...... | 6 | 85 |
| MIMAT0024323 | mml-miR-3200-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024036 | ptr-miR-3200 | 6 | ......_ | 1 | 85 |
| MIMAT0023742 | cgr-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0022639 | ola-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0022439 | ath-miR5662 | 3 | _...... | 8 | 85 |
| MIMAT0021728 | aca-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0019908 | hsa-miR-4761-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019330 | oar-miR-412-5p | 8 | _...... | 3 | 85 |
| MIMAT0018272 | gma-miR4387b | 1 | ......_ | 6 | 85 |
| MIMAT0018006 | hsa-miR-3622b-3p | 6 | _...... | 1 | 85 |
| MIMAT0018004 | hsa-miR-3622a-3p | 6 | _...... | 1 | 85 |
| MIMAT0016614 | cin-miR-4063-5p | 8 | ......_ | 3 | 85 |
| MIMAT0016346 | ahy-miR3520-5p | 1 | _...... | 6 | 85 |
| MIMAT0015749 | ppy-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0017400 | aly-miR156b-3p | 8 | _...... | 3 | 85 |
| MIMAT0015085 | hsa-miR-3200-3p | 6 | ......_ | 1 | 85 |
| MIMAT0013155 | eca-miR-412 | 7 | _...... | 2 | 85 |
| MIMAT0013009 | eca-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0012464 | dsi-miR-1010-3p | 8 | _...... | 3 | 85 |
| MIMAT0012274 | dps-miR-1010-3p | 8 | _...... | 3 | 85 |
| MIMAT0009455 | mmu-miR-1983 | 7 | _...... | 2 | 85 |
| MIMAT0007984 | ptr-miR-125a | 3 | _...... | 8 | 85 |
| MIMAT0006182 | mml-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0007639 | gga-miR-1736-3p | 8 | ......_ | 3 | 85 |
| MIMAT0007411 | gga-miR-1554 | 3 | _...... | 8 | 85 |
| MIMAT0006059 | odi-miR-1499 | 8 | ......_ | 3 | 85 |
| MIMAT0006021 | odi-miR-1470 | 8 | ......_ | 3 | 85 |
| MIMAT0005862 | mml-miR-1241 | 7 | _...... | 2 | 85 |
| MIMAT0005376 | cre-miR1142 | 1 | ......_ | 6 | 85 |
| MIMAT0005135 | ppt-miR1032 | 1 | _...... | 6 | 85 |
| MIMAT0005029 | dme-miR-1016-3p | 7 | _...... | 2 | 85 |
| MIMAT0005023 | dme-miR-1010-3p | 8 | _...... | 3 | 85 |
| MIMAT0004386 | cre-miR905-3p | 1 | ......_ | 6 | 85 |
| MIMAT0003124 | rno-miR-412-3p | 8 | _...... | 3 | 85 |
| MIMAT0001741 | zma-miR171g-3p | 2 | _...... | 7 | 85 |
| MIMAT0001566 | mghv-miR-M1-3-3p | 2 | _...... | 7 | 85 |
| MIMAT0001463 | sbi-miR171c | 2 | _...... | 7 | 85 |
| MIMAT0001094 | mmu-miR-412-3p | 7 | _...... | 2 | 85 |
| MIMAT0001068 | osa-miR171g | 2 | _...... | 7 | 85 |
| MIMAT0004729 | rno-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0004602 | hsa-miR-125a-3p | 3 | _...... | 8 | 85 |
| MIMAT0004528 | mmu-miR-125a-3p | 3 | _...... | 8 | 85 |
