| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aaggtgg | 7 | ||
| MIMAT0031575 | bbe-miR-10b-3p | 2 | ....... | 8 | 100 |
| MIMAT0029823 | mmu-miR-7658-3p | 8 | ....... | 2 | 100 |
| MIMAT0027978 | mmu-miR-7037-5p | 1 | ....... | 7 | 100 |
| MIMAT0019282 | oar-miR-654-5p | 2 | ....... | 8 | 100 |
| MIMAT0013615 | bmo-miR-2755-5p | 2 | ....... | 8 | 100 |
| MIMAT0011686 | ppc-miR-2260 | 2 | ....... | 8 | 100 |
| MIMAT0007461 | gga-miR-1596-3p | 2 | ....... | 8 | 100 |
| MIMAT0001570 | mghv-miR-M1-7-5p | 2 | ....... | 8 | 100 |
| MIMAT0037235 | ata-miR394-3p | 1 | _...... | 6 | 85 |
| MIMAT0036685 | oha-miR-1306-5p | 8 | _...... | 3 | 85 |
| MIMAT0036496 | tch-miR-1306-5p | 6 | _...... | 1 | 85 |
| MIMAT0036267 | chi-miR-502b-3p | 8 | _...... | 3 | 85 |
| MIMAT0035939 | chi-miR-1306-5p | 6 | _...... | 1 | 85 |
| MIMAT0035785 | tae-miR9670-3p | 1 | _...... | 6 | 85 |
| MIMAT0035675 | bra-miR9560b-5p | 3 | _...... | 8 | 85 |
| MIMAT0035673 | bra-miR9560a-5p | 3 | _...... | 8 | 85 |
| MIMAT0035438 | sly-miR394-3p | 1 | _...... | 6 | 85 |
| MIMAT0035091 | efu-miR-9186o | 2 | _...... | 7 | 85 |
| MIMAT0034959 | efu-miR-9186q | 2 | _...... | 7 | 85 |
| MIMAT0034815 | efu-miR-9222 | 6 | ......_ | 1 | 85 |
| MIMAT0034551 | eca-miR-3200 | 6 | ......_ | 1 | 85 |
| MIMAT0034046 | gra-miR8675a | 1 | ......_ | 6 | 85 |
| MIMAT0033650 | sma-miR-8465-3p | 3 | ......_ | 8 | 85 |
| MIMAT0033462 | str-miR-8394-5p | 1 | ......_ | 6 | 85 |
| MIMAT0032770 | ath-miR8171 | 3 | _...... | 8 | 85 |
| MIMAT0030512 | prd-miR-7878-5p | 3 | ......_ | 8 | 85 |
| MIMAT0032186 | pmi-miR-2011-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028818 | mdo-miR-7381-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028777 | mdo-miR-7372-3p | 7 | _...... | 2 | 85 |
| MIMAT0028531 | mdo-miR-7278-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028240 | mml-miR-1306-5p | 6 | _...... | 1 | 85 |
| MIMAT0028210 | dre-miR-1306 | 6 | _...... | 1 | 85 |
| MIMAT0027630 | hsa-miR-6865-5p | 2 | _...... | 7 | 85 |
| MIMAT0027530 | hsa-miR-6815-5p | 2 | _...... | 7 | 85 |
| MIMAT0027504 | hsa-miR-6802-5p | 3 | _...... | 8 | 85 |
| MIMAT0027465 | hsa-miR-6782-3p | 6 | ......_ | 1 | 85 |
| MIMAT0027438 | hsa-miR-6769a-5p | 1 | _...... | 6 | 85 |
| MIMAT0025017 | hme-miR-6310-3p | 3 | _...... | 8 | 85 |
| MIMAT0024851 | rno-miR-1306-5p | 6 | _...... | 1 | 85 |
| MIMAT0024618 | hsa-miR-6134 | 3 | _...... | 8 | 85 |
| MIMAT0024609 | ptr-miR-6134 | 3 | _...... | 8 | 85 |
| MIMAT0024323 | mml-miR-3200-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024070 | ptr-miR-3165 | 1 | _...... | 6 | 85 |
| MIMAT0024036 | ptr-miR-3200 | 6 | ......_ | 1 | 85 |
| MIMAT0023752 | cgr-miR-1306-5p | 6 | _...... | 1 | 85 |
| MIMAT0022590 | ola-miR-1306 | 6 | _...... | 1 | 85 |
| MIMAT0022434 | ath-miR5660 | 2 | _...... | 7 | 85 |
| MIMAT0020238 | egr-miR-87-5p | 6 | _...... | 1 | 85 |
| MIMAT0020196 | dme-miR-4969-3p | 6 | _...... | 1 | 85 |
| MIMAT0020051 | sko-miR-4835-5p | 1 | _...... | 6 | 85 |
| MIMAT0019908 | hsa-miR-4761-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019259 | oar-miR-323a-5p | 1 | _...... | 6 | 85 |
| MIMAT0018336 | gma-miR394b-3p | 1 | _...... | 6 | 85 |
| MIMAT0018272 | gma-miR4387b | 1 | ......_ | 6 | 85 |
| MIMAT0018540 | ame-miR-3766 | 2 | _...... | 7 | 85 |
| MIMAT0016771 | cin-miR-4163-3p | 8 | _...... | 3 | 85 |
| MIMAT0016614 | cin-miR-4063-5p | 8 | ......_ | 3 | 85 |
| MIMAT0016274 | sja-miR-3479-5p | 1 | _...... | 6 | 85 |
| MIMAT0016159 | ppy-miR-1224-3p | 8 | _...... | 3 | 85 |
| MIMAT0015825 | ppy-miR-323-5p | 1 | _...... | 6 | 85 |
| MIMAT0017546 | aly-miR394b-3p | 1 | _...... | 6 | 85 |
| MIMAT0017544 | aly-miR394a-3p | 1 | _...... | 6 | 85 |
| MIMAT0015085 | hsa-miR-3200-3p | 6 | ......_ | 1 | 85 |
| MIMAT0015039 | hsa-miR-3165 | 1 | _...... | 6 | 85 |
| MIMAT0013937 | ssc-miR-1306-5p | 6 | _...... | 1 | 85 |
| MIMAT0013131 | eca-miR-323-5p | 1 | _...... | 6 | 85 |
| MIMAT0012330 | dps-miR-2538-5p | 2 | _...... | 7 | 85 |
| MIMAT0009974 | bta-miR-1306 | 6 | _...... | 1 | 85 |
| MIMAT0017350 | mmu-miR-1968-3p | 7 | _...... | 2 | 85 |
| MIMAT0019136 | mmu-miR-1306-5p | 8 | _...... | 3 | 85 |
| MIMAT0006661 | cfa-miR-1306 | 6 | _...... | 1 | 85 |
| MIMAT0006264 | mml-miR-323a-5p | 1 | _...... | 6 | 85 |
| MIMAT0007639 | gga-miR-1736-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026770 | mdo-miR-1546-3p | 6 | _...... | 1 | 85 |
| MIMAT0006059 | odi-miR-1499 | 8 | ......_ | 3 | 85 |
| MIMAT0006039 | odi-miR-1486 | 3 | _...... | 8 | 85 |
| MIMAT0006021 | odi-miR-1470 | 8 | ......_ | 3 | 85 |
| MIMAT0026763 | gga-miR-1306-5p | 7 | _...... | 2 | 85 |
| MIMAT0007297 | oan-miR-1421ag-5p | 1 | _...... | 6 | 85 |
| MIMAT0007088 | oan-miR-1421u-5p | 1 | _...... | 6 | 85 |
| MIMAT0007084 | oan-miR-1421s-5p | 1 | _...... | 6 | 85 |
| MIMAT0007080 | oan-miR-1421q-5p | 1 | _...... | 6 | 85 |
| MIMAT0007074 | oan-miR-1421n-5p | 1 | _...... | 6 | 85 |
| MIMAT0022726 | hsa-miR-1306-5p | 6 | _...... | 1 | 85 |
| MIMAT0005571 | mml-miR-1224-3p | 8 | _...... | 3 | 85 |
| MIMAT0005569 | ptr-miR-1224-3p | 8 | _...... | 3 | 85 |
| MIMAT0005376 | cre-miR1142 | 1 | ......_ | 6 | 85 |
| MIMAT0004386 | cre-miR905-3p | 1 | ......_ | 6 | 85 |
| MIMAT0017231 | mmu-miR-1224-3p | 8 | _...... | 3 | 85 |
| MIMAT0005459 | hsa-miR-1224-3p | 8 | _...... | 3 | 85 |
| MIMAT0004817 | ebv-miR-BART10-5p | 7 | _...... | 2 | 85 |
| MIMAT0015163 | zma-miR394b-3p | 1 | _...... | 6 | 85 |
| MIMAT0015162 | zma-miR394a-3p | 1 | _...... | 6 | 85 |
| MIMAT0031907 | ath-miR394b-3p | 1 | _...... | 6 | 85 |
| MIMAT0017108 | rno-miR-92a-2-5p | 1 | _...... | 6 | 85 |
| MIMAT0004696 | hsa-miR-323a-5p | 1 | _...... | 6 | 85 |
| MIMAT0017076 | mmu-miR-363-5p | 2 | _...... | 7 | 85 |
| MIMAT0004638 | mmu-miR-323-5p | 1 | _...... | 6 | 85 |
| MIMAT0004637 | rno-miR-323-5p | 1 | _...... | 6 | 85 |
| MIMAT0004635 | mmu-miR-92a-2-5p | 1 | _...... | 6 | 85 |
