| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagtgacg | 8 | ||
| MIMAT0001577 | hcmv-miR-UL112-3p | 1 | ........ | 8 | 100 |
| MIMAT0035879 | bra-miR161-3p | 7 | ......._ | 1 | 87 |
| MIMAT0027735 | mmu-miR-6917-3p | 7 | ......._ | 1 | 87 |
| MIMAT0022137 | osa-miR5504 | 1 | _....... | 7 | 87 |
| MIMAT0016445 | cin-miR-4001a-1-3p | 7 | ......._ | 1 | 87 |
| MIMAT0016290 | sja-miR-3485-5p | 8 | _....... | 2 | 87 |
| MIMAT0017444 | aly-miR161-3p.2 | 7 | ......._ | 1 | 87 |
| MIMAT0007497 | gga-miR-1627-5p | 2 | ......._ | 8 | 87 |
| MIMAT0030502 | prd-miR-1175-5p | 1 | ......a. | 8 | 87 |
| MIMAT0027779 | mmu-miR-6939-3p | 8 | ......g. | 1 | 87 |
| MIMAT0021274 | mtr-miR5265 | 1 | ......t. | 8 | 87 |
| MIMAT0018274 | gma-miR4371b | 1 | ......t. | 8 | 87 |
| MIMAT0018273 | gma-miR4371a | 1 | ......t. | 8 | 87 |
| MIMAT0009816 | nve-miR-2046-5p | 8 | ......t. | 1 | 87 |
| MIMAT0007404 | gga-miR-1550-3p | 8 | ......a. | 1 | 87 |
| MIMAT0037009 | ssc-miR-9791-3p | 3 | ......__ | 8 | 75 |
| MIMAT0035497 | bdi-miR9486b | 2 | ......__ | 7 | 75 |
| MIMAT0035338 | gsa-miR-9396-5p | 3 | ......__ | 8 | 75 |
| MIMAT0034534 | eca-miR-8995 | 2 | __...... | 7 | 75 |
| MIMAT0034378 | cfa-miR-8878 | 3 | __...... | 8 | 75 |
| MIMAT0034063 | gra-miR8690 | 3 | _......_ | 8 | 75 |
| MIMAT0033979 | gra-miR8633 | 2 | ......__ | 7 | 75 |
| MIMAT0033623 | sma-miR-8455-3p | 3 | ......__ | 8 | 75 |
| MIMAT0033354 | str-miR-86-5p | 2 | ......__ | 7 | 75 |
| MIMAT0033147 | ppc-miR-8308-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032980 | ppc-miR-8256-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032941 | ppc-miR-2238i-3p | 1 | _......_ | 6 | 75 |
| MIMAT0032857 | ppc-miR-2238f-3p | 1 | _......_ | 6 | 75 |
| MIMAT0031762 | bma-miR-86 | 2 | ......__ | 7 | 75 |
| MIMAT0031348 | stu-miR156f-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030699 | prd-miR-7925-3p | 6 | ......__ | 1 | 75 |
| MIMAT0030466 | prd-miR-86-5p | 2 | ......__ | 7 | 75 |
| MIMAT0030461 | prd-miR-71-3p | 7 | _......_ | 2 | 75 |
| MIMAT0030072 | bdi-miR156e-3p | 8 | ......__ | 3 | 75 |
| MIMAT0032185 | pmi-miR-2011-5p | 8 | _......_ | 3 | 75 |
| MIMAT0029751 | cbn-miR-785 | 2 | ......__ | 7 | 75 |
| MIMAT0029750 | cbn-miR-86 | 2 | ......__ | 7 | 75 |
| MIMAT0029609 | cbr-miR-785b | 2 | ......__ | 7 | 75 |
| MIMAT0029016 | oan-miR-7433-5p | 8 | _......_ | 3 | 75 |
| MIMAT0028960 | oan-miR-7407-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028805 | mdo-miR-7373c-3p | 2 | _......_ | 7 | 75 |
| MIMAT0026363 | bma-miR-5864 | 3 | ......__ | 8 | 75 |
| MIMAT0025791 | gga-miR-6685-3p | 3 | __...... | 8 | 75 |
| MIMAT0025623 | gga-miR-6558-5p | 1 | ......__ | 6 | 75 |
| MIMAT0025525 | han-miR3630-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025375 | ssc-miR-489 | 1 | _......_ | 6 | 75 |
| MIMAT0025028 | sma-miR-190-3p | 2 | _......_ | 7 | 75 |
| MIMAT0027277 | ppe-miR6261 | 1 | ......__ | 6 | 75 |
| MIMAT0024252 | ggo-miR-668 | 8 | _......_ | 3 | 75 |
| MIMAT0023383 | hco-miR-5914 | 2 | _......_ | 7 | 75 |
| MIMAT0023350 | hco-miR-86 | 2 | ......__ | 7 | 75 |
| MIMAT0023185 | gma-miR5780a | 7 | ......__ | 2 | 75 |
| MIMAT0022365 | mmu-miR-5619-5p | 7 | _......_ | 2 | 75 |
| MIMAT0022361 | mmu-miR-5617-5p | 3 | ......__ | 8 | 75 |
| MIMAT0022094 | aca-miR-5462 | 7 | ......__ | 2 | 75 |
| MIMAT0021940 | aca-miR-34a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0021479 | asu-miR-86-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021258 | mtr-miR5258 | 3 | ......__ | 8 | 75 |
| MIMAT0021121 | hsa-miR-5190 | 3 | _......_ | 8 | 75 |
| MIMAT0027057 | bdi-miR156b-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019311 | oar-miR-668-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018972 | hsa-miR-548ah-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018933 | hsa-miR-4420 | 6 | _......_ | 1 | 75 |
| MIMAT0018301 | gma-miR4387d | 8 | _......_ | 3 | 75 |
| MIMAT0018875 | tca-miR-3888-3p | 2 | __...... | 7 | 75 |
| MIMAT0018836 | tca-miR-3872-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018646 | tca-miR-3812-5p | 2 | ......__ | 7 | 75 |
| MIMAT0018559 | ame-miR-3781 | 2 | ......__ | 7 | 75 |
| MIMAT0017986 | hsa-miR-3609 | 3 | ......__ | 8 | 75 |
| MIMAT0016646 | cin-miR-4078-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016594 | cin-miR-4052-3p | 6 | ......__ | 1 | 75 |
| MIMAT0016542 | cin-miR-4026-5p | 3 | ......__ | 8 | 75 |
| MIMAT0016311 | sja-miR-3502 | 1 | __...... | 6 | 75 |
| MIMAT0016266 | sja-miR-190-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016170 | ppy-miR-1245 | 1 | ......__ | 6 | 75 |
| MIMAT0016095 | ppy-miR-668 | 7 | _......_ | 2 | 75 |
| MIMAT0015640 | mmu-miR-3470a | 6 | ......__ | 1 | 75 |
| MIMAT0017729 | aly-miR3447-5p | 2 | __...... | 7 | 75 |
| MIMAT0015427 | bmo-miR-3245 | 8 | _......_ | 3 | 75 |
| MIMAT0017368 | rno-miR-547-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012839 | rno-miR-668 | 7 | _......_ | 2 | 75 |
| MIMAT0012512 | dsi-miR-2579 | 3 | ......__ | 8 | 75 |
| MIMAT0011662 | ppc-miR-86 | 2 | ......__ | 7 | 75 |
| MIMAT0011602 | crm-miR-785 | 2 | ......__ | 7 | 75 |
| MIMAT0011585 | crm-miR-86-5p | 2 | ......__ | 7 | 75 |
| MIMAT0011463 | cel-miR-2221 | 2 | ......__ | 7 | 75 |
| MIMAT0011312 | dre-miR-2192 | 2 | ......__ | 7 | 75 |
| MIMAT0009696 | aqu-miR-2019-5p | 2 | ......__ | 7 | 75 |
| MIMAT0008313 | ptr-miR-668 | 7 | _......_ | 2 | 75 |
| MIMAT0007971 | ptr-miR-1245 | 1 | ......__ | 6 | 75 |
| MIMAT0006504 | mml-miR-668 | 7 | _......_ | 2 | 75 |
| MIMAT0007744 | gga-miR-449b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0007718 | gga-miR-1802 | 2 | _......_ | 7 | 75 |
| MIMAT0007715 | gga-miR-1799 | 3 | ......__ | 8 | 75 |
| MIMAT0007515 | gga-miR-1640 | 8 | _......_ | 3 | 75 |
| MIMAT0005978 | osa-miR810b.2 | 1 | ......__ | 6 | 75 |
| MIMAT0005897 | hsa-miR-1245a | 1 | ......__ | 6 | 75 |
| MIMAT0022945 | hsa-miR-1236-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005555 | mcmv-miR-m107-1-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005522 | cel-miR-1021 | 1 | ......__ | 6 | 75 |
| MIMAT0022935 | mtr-miR398a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004286 | cbr-miR-785a | 2 | ......__ | 7 | 75 |
| MIMAT0004220 | cel-miR-785-3p | 2 | ......__ | 7 | 75 |
| MIMAT0003642 | xtr-miR-489 | 1 | _......_ | 6 | 75 |
| MIMAT0003732 | mmu-miR-668-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003881 | hsa-miR-668-3p | 7 | _......_ | 2 | 75 |
| MIMAT0003365 | gga-miR-489-3p | 1 | _......_ | 6 | 75 |
| MIMAT0002940 | dre-miR-489 | 1 | _......_ | 6 | 75 |
| MIMAT0002939 | tni-miR-489 | 1 | _......_ | 6 | 75 |
| MIMAT0002938 | fru-miR-489 | 1 | _......_ | 6 | 75 |
| MIMAT0015129 | zma-miR156a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0015126 | zma-miR156g-3p | 8 | ......__ | 3 | 75 |
| MIMAT0015125 | zma-miR156f-3p | 8 | ......__ | 3 | 75 |
| MIMAT0015124 | zma-miR156d-3p | 8 | ......__ | 3 | 75 |
| MIMAT0022866 | osa-miR156l-3p | 8 | ......__ | 3 | 75 |
| MIMAT0031157 | osa-miR156h-3p | 8 | ......__ | 3 | 75 |
| MIMAT0022848 | osa-miR156g-3p | 8 | ......__ | 3 | 75 |
| MIMAT0022847 | osa-miR156f-3p | 8 | ......__ | 3 | 75 |
| MIMAT0022846 | osa-miR156c-3p | 8 | ......__ | 3 | 75 |
| MIMAT0000491 | cbr-miR-86 | 2 | ......__ | 7 | 75 |
| MIMAT0000059 | cel-miR-86-5p | 2 | ......__ | 7 | 75 |
