Result for your query miRNA sequence
>rrv-miR-rr1-8-3p
aagugcu

RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap


Acc numbermiRNAStartAlignmentEnd% Identity
Query1aagtgct7
MIMAT0036805oha-miR-20b-5p2.......8100
MIMAT0036418ggo-miR-519b1.......7100
MIMAT0036409ggo-miR-520f1.......7100
MIMAT0036329ocu-miR-520e2.......8100
MIMAT0036326ocu-miR-294-3p2.......8100
MIMAT0036323ocu-miR-302d-3p2.......8100
MIMAT0036321ocu-miR-302a-3p2.......8100
MIMAT0036319ocu-miR-302c-3p2.......8100
MIMAT0036317ocu-miR-302b-3p2.......8100
MIMAT0034639eca-miR-3722.......8100
MIMAT0032636ssa-miR-430c-3p2.......8100
MIMAT0032634ssa-miR-430b-3p2.......8100
MIMAT0032632ssa-miR-430a-3p2.......8100
MIMAT0030679prd-miR-7919-3p8.......2100
MIMAT0030363hhi-miR-430b2.......8100
MIMAT0030341hhi-miR-430a2.......8100
MIMAT0026298ccr-miR-4302.......8100
MIMAT0022040aca-miR-54202.......8100
MIMAT0021919aca-miR-302b2.......8100
MIMAT0019552pma-miR-430e2.......8100
MIMAT0019551pma-miR-430d2.......8100
MIMAT0019550pma-miR-430c2.......8100
MIMAT0019548pma-miR-430a2.......8100
MIMAT0019541pma-miR-430f2.......8100
MIMAT0019538pma-miR-3022.......8100
MIMAT0015974ppy-miR-520f1.......7100
MIMAT0015973ppy-miR-520e2.......8100
MIMAT0015972ppy-miR-520d-3p2.......8100
MIMAT0015970ppy-miR-520c-3p2.......8100
MIMAT0015968ppy-miR-520b2.......8100
MIMAT0015967ppy-miR-520a-3p2.......8100
MIMAT0015937ppy-miR-512-3p1.......7100
MIMAT0015861ppy-miR-3732.......8100
MIMAT0015860ppy-miR-3722.......8100
MIMAT0015819ppy-miR-302d2.......8100
MIMAT0015818ppy-miR-302c2.......8100
MIMAT0015817ppy-miR-302b2.......8100
MIMAT0013807ola-miR-430d2.......8100
MIMAT0013806ola-miR-430b2.......8100
MIMAT0013805ola-miR-430c2.......8100
MIMAT0013804ola-miR-430a2.......8100
MIMAT0012914eca-miR-302d2.......8100
MIMAT0012913eca-miR-302c2.......8100
MIMAT0012912eca-miR-302b2.......8100
MIMAT0012911eca-miR-302a2.......8100
MIMAT0017366rno-miR-295-3p1.......7100
MIMAT0012825rno-miR-1052.......8100
MIMAT0009281bta-miR-302c2.......8100
MIMAT0009280bta-miR-302b2.......8100
MIMAT0009279bta-miR-302d2.......8100
MIMAT0009278bta-miR-302a1.......7100
MIMAT0008202ptr-miR-520f1.......7100
MIMAT0008201ptr-miR-520e2.......8100
MIMAT0008200ptr-miR-520d2.......8100
MIMAT0008198ptr-miR-520b2.......8100
MIMAT0008197ptr-miR-520a2.......8100
MIMAT0008180ptr-miR-5121.......7100
MIMAT0008122ptr-miR-3722.......8100
MIMAT0008090ptr-miR-302e2.......8100
MIMAT0008089ptr-miR-302d2.......8100
MIMAT0008088ptr-miR-302c2.......8100
MIMAT0008087ptr-miR-302b2.......8100
MIMAT0008086ptr-miR-302a2.......8100
MIMAT0006749cfa-miR-106a2.......8100
MIMAT0006388mml-miR-520a-3p2.......8100
MIMAT0006384mml-miR-519a-3p2.......8100
MIMAT0006378mml-miR-518a-3p2.......8100
MIMAT0006372mml-miR-512-3p1.......7100
MIMAT0006299mml-miR-3732.......8100
MIMAT0006298mml-miR-372-3p2.......8100
MIMAT0006262mml-miR-302d2.......8100
MIMAT0006261mml-miR-302c2.......8100
MIMAT0006260mml-miR-302b2.......8100
MIMAT0006259mml-miR-302a-3p2.......8100
MIMAT0007195oan-miR-302-3p2.......8100
MIMAT0007110oan-miR-13782.......8100
MIMAT0006926oan-miR-1420c-3p2.......8100
MIMAT0006923oan-miR-1420a-3p2.......8100
MIMAT0005931hsa-miR-302e2.......8100
MIMAT0005158ppt-miR10451.......7100
MIMAT0004183mdo-miR-302d2.......8100
MIMAT0004182mdo-miR-302a2.......8100
MIMAT0004181mdo-miR-302c2.......8100
MIMAT0004180mdo-miR-302b2.......8100
MIMAT0004178mdo-miR-93-5p2.......8100
MIMAT0003709xtr-miR-428a2.......8100
MIMAT0003660xtr-miR-93b1.......7100
MIMAT0003659xtr-miR-93a2.......8100
MIMAT0003636xtr-miR-3022.......8100
MIMAT0003377mmu-miR-302d-3p2.......8100
MIMAT0003376mmu-miR-302c-3p1.......7100
MIMAT0003374mmu-miR-302b-3p2.......8100
MIMAT0003360gga-miR-302d2.......8100
MIMAT0003359gga-miR-302c-3p2.......8100
MIMAT0003357gga-miR-302b-3p2.......8100
MIMAT0002856hsa-miR-520d-3p2.......8100
MIMAT0002846hsa-miR-520c-3p2.......8100
MIMAT0002843hsa-miR-520b2.......8100
MIMAT0002834hsa-miR-520a-3p2.......8100
MIMAT0002830hsa-miR-520f-3p1.......7100
MIMAT0002825hsa-miR-520e2.......8100
MIMAT0002823hsa-miR-512-3p1.......7100
MIMAT0002781mne-miR-932.......8100
MIMAT0002778lla-miR-932.......8100
MIMAT0002776sla-miR-932.......8100
MIMAT0002773mml-miR-93-5p2.......8100
MIMAT0002770ptr-miR-932.......8100
MIMAT0002767ppy-miR-932.......8100
MIMAT0002764ppa-miR-932.......8100
MIMAT0002762age-miR-932.......8100
MIMAT0002759ggo-miR-932.......8100
MIMAT0001880dre-miR-430i-3p2.......8100
MIMAT0001425dre-miR-430c-3p2.......8100
MIMAT0001424dre-miR-430b-3p2.......8100
MIMAT0001423dre-miR-430a-3p2.......8100
MIMAT0001345xla-miR-4282.......8100
MIMAT0001344xla-miR-4272.......8100
MIMAT0001143gga-miR-302a1.......7100
MIMAT0000895rno-miR-291a-3p2.......8100
MIMAT0000726hsa-miR-373-3p2.......8100
MIMAT0000724hsa-miR-372-3p2.......8100
MIMAT0000718hsa-miR-302d-3p2.......8100
MIMAT0000717hsa-miR-302c-3p2.......8100
MIMAT0000715hsa-miR-302b-3p2.......8100
MIMAT0000684hsa-miR-302a-3p2.......8100
MIMAT0000380mmu-miR-302a-3p2.......8100
MIMAT0000373mmu-miR-295-3p2.......8100
MIMAT0000372mmu-miR-294-3p2.......8100
MIMAT0000368mmu-miR-291a-3p2.......8100
MIMAT0036822oha-miR-20a-5p3......_885
MIMAT0036751oha-miR-17-5p3......_885
MIMAT0036617tch-miR-93-5p3......_885
MIMAT0036569tch-miR-20a-5p3......_885
MIMAT0036516tch-miR-17-5p3......_885
MIMAT0036425ggo-miR-519d3......_885
MIMAT0036408ggo-miR-519e-3p1......_685
MIMAT0036334ocu-miR-512b-3p1......_685
MIMAT0036332ocu-miR-512a-3p1......_685
MIMAT0036305chi-miR-93-5p3......_885
MIMAT0036056chi-miR-20b3......_885
MIMAT0036054chi-miR-20a-5p3......_885
MIMAT0035998chi-miR-17-5p3......_885
MIMAT0035908chi-miR-106b-5p3......_885
MIMAT0035906chi-miR-106a-5p3......_885
MIMAT0035374nve-miR-94181......_685
MIMAT0034996efu-miR-203......_885
MIMAT0034867efu-miR-92503......_885
MIMAT0034603eca-miR-35487_......285
MIMAT0034153gra-miR87417_......285
MIMAT0033396str-miR-7880t-5p6......_185
MIMAT0032807cel-miR-8197-5p1_......685
MIMAT0032747ssa-miR-8160-3p8_......385
MIMAT0032713ssa-miR-93a-5p3......_885
MIMAT0032506ssa-miR-20b-5p3......_885
MIMAT0032502ssa-miR-20a-5p3......_885
MIMAT0032414ssa-miR-17-5p3......_885
MIMAT0032288ssa-miR-106b-5p3......_885
MIMAT0032286ssa-miR-106a-5p3......_885
MIMAT0031246stu-miR3627-3p1......_685
MIMAT0030727prd-miR-7935-3p6......_185
MIMAT0030301bdi-miR7775-3p3_......885
MIMAT0030061oar-miR-106a3......_885
MIMAT0030037oar-miR-17-5p3......_885
MIMAT0030028oar-miR-106b3......_885
MIMAT0029901mmu-miR-290b-3p1......_685
MIMAT0029049gga-miR-7447-3p8_......385
MIMAT0028764mdo-miR-20b-5p3......_885
MIMAT0028599mdo-miR-1643b-3p3......_885
MIMAT0028590mdo-miR-7299-5p2_......785
MIMAT0028346mml-miR-7193-5p2_......785
MIMAT0026325ccr-miR-933......_885
MIMAT0026265ccr-miR-20a-5p3......_885
MIMAT0026236ccr-miR-17-5p3......_885
MIMAT0025755gga-miR-6654-3p8_......385
MIMAT0025703gga-miR-6608-3p6_......185
MIMAT0025359ssc-miR-20b3......_885
MIMAT0025129mmu-miR-63833......_885
MIMAT0025100mmu-miR-63577_......285
MIMAT0025088mmu-miR-63457_......285
MIMAT0027269pgi-miR6143b-3p7_......285
MIMAT0024227ggo-miR-20b3......_885
MIMAT0024013cgr-miR-93-5p3......_885
MIMAT0023847cgr-miR-20a3......_885
MIMAT0023795cgr-miR-17-5p3......_885
MIMAT0023732cgr-miR-106b-5p3......_885
MIMAT0023165gma-miR57681......_685
MIMAT0022819sha-miR-933......_885
MIMAT0022654ola-miR-173......_885
MIMAT0022591ola-miR-106a3......_885
MIMAT0022533ola-miR-20a3......_885
MIMAT0022010aca-miR-54008_......385
MIMAT0021863aca-miR-20b-5p3......_885
MIMAT0021861aca-miR-20a-5p3......_885
MIMAT0021803aca-miR-17-5p3......_885
MIMAT0027085bdi-miR5181a-3p8......_385
MIMAT0019893hsa-miR-371b-3p1......_685
MIMAT0019679osa-miR812n-5p1......_685
MIMAT0019571pma-miR-4542-3p3......_885
MIMAT0019397pma-miR-20b3......_885
MIMAT0019395pma-miR-20a-5p3......_885
MIMAT0019386pma-miR-17c3......_885
MIMAT0019385pma-miR-17b3......_885
MIMAT0019383pma-miR-17a-5p3......_885
MIMAT0019310oar-miR-668-5p3......_885
MIMAT0019000hsa-miR-44733_......885
MIMAT0018792tca-miR-3860-5p7_......285
MIMAT0016887hsa-miR-43258......_385
MIMAT0016415cin-miR-367-5p1_......685
MIMAT0017806rno-miR-35487_......285
MIMAT0015965ppy-miR-519e1......_685
MIMAT0015964ppy-miR-519d3......_885
MIMAT0015953ppy-miR-518b3......_885
MIMAT0015859ppy-miR-371-3p1......_685
MIMAT0015732ppy-miR-20b3......_885
MIMAT0014591tgu-miR-20b-5p3......_885
MIMAT0014590tgu-miR-106-5p3......_885
MIMAT0017390tgu-miR-17a-5p3......_885
MIMAT0014553tgu-miR-20a-5p3......_885
MIMAT0014490tgu-miR-29808_......385
MIMAT0013967bhv1-miR-B6-5p1......_685
MIMAT0013202eca-miR-20b3......_885
MIMAT0013194eca-miR-106a3......_885
MIMAT0013088eca-miR-20a3......_885
MIMAT0013084eca-miR-173......_885
MIMAT0013060eca-miR-933......_885
MIMAT0013054eca-miR-106b3......_885
MIMAT0013014eca-miR-371-3p1......_685
MIMAT0012742mdo-miR-106-5p3......_885
MIMAT0013601bmo-miR-11-5p7_......285
MIMAT0012521dsi-miR-2494-5p3......_885
MIMAT0012204dme-miR-2495-5p8......_385
MIMAT0012202dme-miR-2494-5p3......_885
MIMAT0011884bta-miR-23498......_385
MIMAT0019173bfl-miR-2072-3p8_......385
MIMAT0009830cfa-miR-20b3......_885
MIMAT0009615sko-miR-33-3p2_......785
MIMAT0009433mmu-miR-19603_......885
MIMAT0009301bta-miR-3711......_685
MIMAT0009218bta-miR-106b3......_885
MIMAT0008196ptr-miR-519e1......_685
MIMAT0008195ptr-miR-519d3......_885
MIMAT0008121ptr-miR-3711......_685
MIMAT0008069ptr-miR-20b3......_885
MIMAT0007777osa-miR18556_......185
MIMAT0007755ssc-miR-17-5p3......_885
MIMAT0006696cfa-miR-933......_885
MIMAT0006695cfa-miR-106b3......_885
MIMAT0006651cfa-miR-20a3......_885
MIMAT0006387mml-miR-519d3......_885
MIMAT0006297mml-miR-371-3p1......_685
MIMAT0006164mml-miR-20b-5p3......_885
MIMAT0007640gga-miR-17377_......285
MIMAT0007320oan-miR-1419f-5p1_......685
MIMAT0007278oan-miR-17-5p3......_885
MIMAT0007253oan-miR-1419d-5p3_......885
MIMAT0007240oan-miR-1419b-5p1_......685
MIMAT0007145oan-miR-20a-5p3......_885
MIMAT0006853oan-miR-20b-5p3......_885
MIMAT0006849oan-miR-106-5p3......_885
MIMAT0005566xtr-miR-4273......_885
MIMAT0005399cre-miR1153-5p.21_......685
MIMAT0004856mmu-miR-1053......_885
MIMAT0004169mdo-miR-20a-5p3......_885
MIMAT0004165mdo-miR-17-5p3......_885
MIMAT0003837bta-miR-933......_885
MIMAT0003815bta-miR-17-5p3......_885
MIMAT0003796bta-miR-20b3......_885
MIMAT0003784bta-miR-106a3......_885
MIMAT0003707xtr-miR-20b3......_885
MIMAT0003669xtr-miR-20a-5p3......_885
MIMAT0003583xtr-miR-1063......_885
MIMAT0003564xtr-miR-17-5p3......_885
MIMAT0003527bta-miR-20a3......_885
MIMAT0005448mmu-miR-467b-5p3......_885
MIMAT0003211rno-miR-20b-5p3......_885
MIMAT0003187mmu-miR-20b-5p3......_885
MIMAT0003084tni-miR-203......_885
MIMAT0003083fru-miR-203......_885
MIMAT0002917tni-miR-173......_885
MIMAT0002916fru-miR-173......_885
MIMAT0002853hsa-miR-519d-3p3......_885
MIMAT0002836hsa-miR-526b-3p3......_885
MIMAT0002829hsa-miR-519e-3p1......_685
MIMAT0002802mne-miR-106a3......_885
MIMAT0002801sla-miR-106a3......_885
MIMAT0002800ptr-miR-106a3......_885
MIMAT0002799ppy-miR-106a3......_885
MIMAT0002798mml-miR-106a-5p3......_885
MIMAT0002797ppa-miR-106a3......_885
MIMAT0002796age-miR-106a3......_885
MIMAT0002795ggo-miR-106a3......_885
MIMAT0002780mne-miR-106b3......_885
MIMAT0002777lla-miR-106b3......_885
MIMAT0002775sla-miR-106b3......_885
MIMAT0002772mml-miR-106b-5p3......_885
MIMAT0002769ptr-miR-106b3......_885
MIMAT0002766ppy-miR-106b3......_885
MIMAT0002763ppa-miR-106b3......_885
MIMAT0002761age-miR-106b3......_885
MIMAT0002758ggo-miR-106b3......_885
MIMAT0002725mne-miR-203......_885
MIMAT0002721mne-miR-17-5p3......_885
MIMAT0002718lla-miR-203......_885
MIMAT0002714lla-miR-17-5p3......_885
MIMAT0002711sla-miR-203......_885
MIMAT0002707sla-miR-17-5p3......_885
MIMAT0002704mml-miR-20a-5p3......_885
MIMAT0002700mml-miR-17-5p3......_885
MIMAT0002697ptr-miR-20a3......_885
MIMAT0002693ptr-miR-17-5p3......_885
MIMAT0002690ppy-miR-20a3......_885
MIMAT0002686ppy-miR-17-5p3......_885
MIMAT0002683ppa-miR-203......_885
MIMAT0002679ppa-miR-17-5p3......_885
MIMAT0002676age-miR-203......_885
MIMAT0002672age-miR-17-5p3......_885
MIMAT0002669lca-miR-203......_885
MIMAT0002665lca-miR-17-5p3......_885
MIMAT0002662ggo-miR-20a3......_885
MIMAT0002658ggo-miR-17-5p3......_885
MIMAT0002129ssc-miR-20a3......_885
MIMAT0002118ssc-miR-106a3......_885
MIMAT0001810dre-miR-933......_885
MIMAT0001786dre-miR-20a-5p3......_885
MIMAT0001778dre-miR-20b-5p3......_885
MIMAT0001777dre-miR-17a-5p3......_885
MIMAT0001572mghv-miR-M1-8-5p6_......185
MIMAT0001413hsa-miR-20b-5p3......_885
MIMAT0001411gga-miR-20b-5p3......_885
MIMAT0001348xla-miR-203......_885
MIMAT0001142gga-miR-106-5p3......_885
MIMAT0001114gga-miR-17-5p3......_885
MIMAT0001111gga-miR-20a-5p3......_885
MIMAT0000897rno-miR-292-3p1......_685
MIMAT0000825rno-miR-106b-5p3......_885
MIMAT0000817rno-miR-93-5p3......_885
MIMAT0000786rno-miR-17-5p3......_885
MIMAT0026485hsa-miR-383-3p8_......385
MIMAT0000723hsa-miR-371a-3p1......_685
MIMAT0000680hsa-miR-106b-5p3......_885
MIMAT0000649mmu-miR-17-5p3......_885
MIMAT0000602rno-miR-20a-5p3......_885
MIMAT0000540mmu-miR-93-5p3......_885
MIMAT0000529mmu-miR-20a-5p3......_885
MIMAT0000386mmu-miR-106b-5p3......_885
MIMAT0000385mmu-miR-106a-5p3......_885
MIMAT0015115cel-miR-239b-3p6......_185
MIMAT0000103hsa-miR-106a-5p3......_885
MIMAT0000093hsa-miR-93-5p3......_885
MIMAT0000075hsa-miR-20a-5p3......_885
MIMAT0000070hsa-miR-17-5p3......_885