| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aagtgggc | 8 | ||
| MIMAT0034543 | eca-miR-9003 | 7 | _....... | 1 | 87 |
| MIMAT0027798 | mmu-miR-6949-5p | 2 | ......._ | 8 | 87 |
| MIMAT0019584 | pma-miR-4552 | 8 | ......._ | 2 | 87 |
| MIMAT0014828 | mmu-miR-3061-5p | 2 | _....... | 8 | 87 |
| MIMAT0011450 | cel-miR-1832b-3p | 1 | _....... | 7 | 87 |
| MIMAT0019086 | rlcv-miR-rL1-7-3p | 1 | _....... | 7 | 87 |
| MIMAT0037235 | ata-miR394-3p | 1 | .g...... | 8 | 87 |
| MIMAT0035438 | sly-miR394-3p | 1 | .g...... | 8 | 87 |
| MIMAT0027280 | ppe-miR6263 | 1 | ......a. | 8 | 87 |
| MIMAT0019940 | hsa-miR-4436b-5p | 8 | ......a. | 1 | 87 |
| MIMAT0018336 | gma-miR394b-3p | 1 | .g...... | 8 | 87 |
| MIMAT0016845 | hsa-miR-4296 | 1 | .t...... | 8 | 87 |
| MIMAT0011308 | dre-miR-2186 | 1 | ......c. | 8 | 87 |
| MIMAT0007068 | oan-miR-1421l-5p | 1 | ......t. | 8 | 87 |
| MIMAT0015163 | zma-miR394b-3p | 1 | .g...... | 8 | 87 |
| MIMAT0015162 | zma-miR394a-3p | 1 | .g...... | 8 | 87 |
| MIMAT0031907 | ath-miR394b-3p | 1 | .g...... | 8 | 87 |
| MIMAT0037010 | ssc-miR-9792-5p | 2 | ......__ | 7 | 75 |
| MIMAT0036566 | tch-miR-491-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036251 | chi-miR-491-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036211 | chi-miR-410-5p | 8 | ......__ | 3 | 75 |
| MIMAT0035556 | dvi-miR-1010-5p | 3 | ......__ | 8 | 75 |
| MIMAT0035459 | sly-miR482d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0034907 | efu-miR-9186p | 2 | ......__ | 7 | 75 |
| MIMAT0034860 | efu-miR-9246a | 7 | __...... | 2 | 75 |
| MIMAT0033833 | atr-miR8560 | 7 | ......__ | 2 | 75 |
| MIMAT0033755 | pxy-miR-279a | 1 | _......_ | 6 | 75 |
| MIMAT0033665 | sma-miR-2162-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032952 | ppc-miR-2235d-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031829 | cpa-miR8136 | 3 | ......__ | 8 | 75 |
| MIMAT0031769 | hbv-miR-B19-5p | 1 | __...... | 6 | 75 |
| MIMAT0030604 | prd-miR-4816-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030541 | prd-miR-360-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029878 | mmu-miR-3620-5p | 3 | __...... | 8 | 75 |
| MIMAT0029822 | mmu-miR-7658-5p | 2 | __...... | 7 | 75 |
| MIMAT0029816 | mmu-miR-7655-5p | 8 | __...... | 3 | 75 |
| MIMAT0029804 | mmu-miR-7651-5p | 1 | ......__ | 6 | 75 |
| MIMAT0028848 | mdo-miR-7386k-5p | 2 | __...... | 7 | 75 |
| MIMAT0028697 | mdo-miR-7343-3p | 6 | ......__ | 1 | 75 |
| MIMAT0028082 | mmu-miR-7088-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028076 | mmu-miR-7085-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028014 | mmu-miR-7055-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027913 | mmu-miR-7004-3p | 6 | _......_ | 1 | 75 |
| MIMAT0027888 | mmu-miR-6993-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027812 | mmu-miR-6956-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027752 | mmu-miR-6926-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027456 | hsa-miR-6778-5p | 1 | _......_ | 6 | 75 |
| MIMAT0027385 | hsa-miR-6742-5p | 1 | _......_ | 6 | 75 |
| MIMAT0025401 | tgu-miR-1669 | 1 | __...... | 6 | 75 |
| MIMAT0025143 | mmu-miR-6393 | 8 | __...... | 3 | 75 |
| MIMAT0025106 | mmu-miR-6362 | 1 | __...... | 6 | 75 |
| MIMAT0024935 | hme-miR-1175 | 1 | ......__ | 6 | 75 |
| MIMAT0024575 | bta-miR-4286 | 8 | _......_ | 3 | 75 |
| MIMAT0024399 | ppy-miR-4796 | 3 | ......__ | 8 | 75 |
| MIMAT0024341 | mml-miR-4796-3p | 1 | ......__ | 6 | 75 |
| MIMAT0027114 | mml-miR-1296-3p | 2 | _......_ | 7 | 75 |
| MIMAT0024238 | ggo-miR-654 | 3 | __...... | 8 | 75 |
| MIMAT0024229 | ggo-miR-1228 | 1 | __...... | 6 | 75 |
| MIMAT0024196 | ggo-miR-491 | 1 | _......_ | 6 | 75 |
| MIMAT0023604 | nta-miR482b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031163 | stu-miR482e-5p | 1 | _......_ | 6 | 75 |
| MIMAT0031160 | stu-miR482b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023560 | tca-miR-6009-3p | 1 | __...... | 6 | 75 |
| MIMAT0023466 | hco-miR-5962 | 1 | _......_ | 6 | 75 |
| MIMAT0023451 | hco-miR-5949 | 2 | __...... | 7 | 75 |
| MIMAT0023408 | hco-miR-5927 | 6 | _......_ | 1 | 75 |
| MIMAT0022177 | osa-miR5541 | 3 | ......__ | 8 | 75 |
| MIMAT0021572 | asu-miR-5356a-5p | 8 | __...... | 3 | 75 |
| MIMAT0021533 | asu-miR-1175-5p | 1 | ......__ | 6 | 75 |
| MIMAT0021294 | mtr-miR5269b | 2 | ......__ | 7 | 75 |
| MIMAT0021293 | mtr-miR5269a | 2 | ......__ | 7 | 75 |
| MIMAT0020709 | bdi-miR5167a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020708 | bdi-miR5166 | 7 | __...... | 2 | 75 |
| MIMAT0020592 | ssc-miR-491 | 1 | _......_ | 6 | 75 |
| MIMAT0020005 | cel-miR-4816-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019971 | hsa-miR-4796-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019968 | hsa-miR-4795-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019878 | hsa-miR-4745-5p | 3 | _......_ | 8 | 75 |
| MIMAT0019848 | hsa-miR-4727-3p | 3 | _......_ | 8 | 75 |
| MIMAT0019660 | pma-miR-4626 | 1 | _......_ | 6 | 75 |
| MIMAT0019333 | oar-miR-410-5p | 8 | ......__ | 3 | 75 |
| MIMAT0019324 | oar-miR-541-3p | 3 | __...... | 8 | 75 |
| MIMAT0019015 | hsa-miR-4481 | 3 | _......_ | 8 | 75 |
| MIMAT0018929 | hsa-miR-4417 | 2 | __...... | 7 | 75 |
| MIMAT0018479 | csi-miR482a-5p | 1 | _......_ | 6 | 75 |
| MIMAT0018818 | tca-miR-1175-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018137 | pab-miR3705 | 3 | ......__ | 8 | 75 |
| MIMAT0022967 | hsa-miR-3620-5p | 1 | __...... | 6 | 75 |
| MIMAT0017992 | hsa-miR-3614-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017976 | ssc-miR-1296-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016916 | hsa-miR-4286 | 8 | _......_ | 3 | 75 |
| MIMAT0016891 | hsa-miR-4265 | 3 | __...... | 8 | 75 |
| MIMAT0016873 | hsa-miR-4322 | 3 | __...... | 8 | 75 |
| MIMAT0016850 | hsa-miR-4301 | 7 | _......_ | 2 | 75 |
| MIMAT0016773 | cin-miR-4165-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016412 | cin-miR-182-3p | 1 | __...... | 6 | 75 |
| MIMAT0017885 | rno-miR-702-3p | 7 | __...... | 2 | 75 |
| MIMAT0016087 | ppy-miR-654-5p | 3 | __...... | 8 | 75 |
| MIMAT0015990 | ppy-miR-541 | 3 | __...... | 8 | 75 |
| MIMAT0015911 | ppy-miR-491-5p | 1 | _......_ | 6 | 75 |
| MIMAT0019209 | hsa-miR-3156-3p | 8 | _......_ | 3 | 75 |
| MIMAT0014488 | tgu-miR-2978 | 1 | __...... | 6 | 75 |
| MIMAT0014390 | cqu-miR-1175-5p | 1 | ......__ | 6 | 75 |
| MIMAT0014264 | aae-miR-1175-5p | 1 | ......__ | 6 | 75 |
| MIMAT0013168 | eca-miR-541 | 3 | __...... | 8 | 75 |
| MIMAT0013116 | eca-miR-491-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026951 | mml-miR-541-3p | 3 | __...... | 8 | 75 |
| MIMAT0013612 | bmo-miR-1175-5p | 1 | ......__ | 6 | 75 |
| MIMAT0012463 | dsi-miR-1010-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012324 | dps-miR-2535-5p | 3 | ......__ | 8 | 75 |
| MIMAT0012273 | dps-miR-1010-5p | 3 | ......__ | 8 | 75 |
| MIMAT0011440 | cel-miR-2212-3p | 1 | ......__ | 6 | 75 |
| MIMAT0009343 | bta-miR-541 | 3 | __...... | 8 | 75 |
| MIMAT0009332 | bta-miR-491 | 1 | _......_ | 6 | 75 |
| MIMAT0007831 | osa-miR1876 | 3 | ......__ | 8 | 75 |
| MIMAT0007767 | osa-miR1847.2 | 8 | __...... | 3 | 75 |
| MIMAT0006495 | mml-miR-654-5p | 3 | __...... | 8 | 75 |
| MIMAT0006352 | mml-miR-491-5p | 1 | _......_ | 6 | 75 |
| MIMAT0026837 | mml-miR-194-3p | 2 | _......_ | 7 | 75 |
| MIMAT0007688 | gga-miR-1777 | 1 | __...... | 6 | 75 |
| MIMAT0007553 | gga-miR-1669 | 1 | __...... | 6 | 75 |
| MIMAT0007551 | gga-miR-1668-5p | 1 | __...... | 6 | 75 |
| MIMAT0015246 | cin-miR-1497-5p | 7 | ......__ | 2 | 75 |
| MIMAT0022725 | hsa-miR-1255b-2-3p | 8 | ......__ | 3 | 75 |
| MIMAT0022943 | hsa-miR-1233-5p | 1 | _......_ | 6 | 75 |
| MIMAT0005582 | hsa-miR-1228-5p | 1 | __...... | 6 | 75 |
| MIMAT0017317 | rno-miR-770-3p | 1 | __...... | 6 | 75 |
| MIMAT0005266 | smo-miR1109 | 2 | _......_ | 7 | 75 |
| MIMAT0020905 | dme-miR-1010-5p | 2 | ......__ | 7 | 75 |
| MIMAT0004920 | hsa-miR-541-3p | 3 | __...... | 8 | 75 |
| MIMAT0003492 | mmu-miR-702-3p | 7 | __...... | 2 | 75 |
| MIMAT0003486 | mmu-miR-491-5p | 1 | _......_ | 6 | 75 |
| MIMAT0003891 | mmu-miR-770-3p | 2 | __...... | 7 | 75 |
| MIMAT0026637 | hsa-miR-1296-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019087 | rlcv-miR-rL1-8-3p | 2 | __...... | 7 | 75 |
| MIMAT0009205 | ebv-miR-BART5-3p | 1 | __...... | 6 | 75 |
| MIMAT0003330 | hsa-miR-654-5p | 3 | __...... | 8 | 75 |
| MIMAT0002807 | hsa-miR-491-5p | 1 | _......_ | 6 | 75 |
| MIMAT0001583 | hcmv-miR-US25-2-3p | 8 | ......__ | 3 | 75 |
| MIMAT0017148 | rno-miR-194-3p | 3 | _......_ | 8 | 75 |
| MIMAT0017125 | rno-miR-134-3p | 3 | __...... | 8 | 75 |
| MIMAT0017073 | mmu-miR-194-2-3p | 3 | _......_ | 8 | 75 |
| MIMAT0004671 | hsa-miR-194-3p | 3 | _......_ | 8 | 75 |
| MIMAT0020807 | dme-miR-279-5p | 1 | _......_ | 6 | 75 |
| MIMAT0016985 | mmu-miR-134-3p | 3 | __...... | 8 | 75 |
