| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aatgggt | 7 | ||
| MIMAT0036284 | chi-miR-660 | 8 | ....... | 2 | 100 |
| MIMAT0035154 | efu-miR-660 | 8 | ....... | 2 | 100 |
| MIMAT0033685 | sma-miR-8482-5p | 1 | ....... | 7 | 100 |
| MIMAT0027877 | mmu-miR-6987-3p | 8 | ....... | 2 | 100 |
| MIMAT0024164 | ggo-miR-660 | 8 | ....... | 2 | 100 |
| MIMAT0019042 | hsa-miR-4506 | 2 | ....... | 8 | 100 |
| MIMAT0016534 | cin-miR-4020b-3p | 7 | ....... | 1 | 100 |
| MIMAT0016171 | ppy-miR-1246 | 1 | ....... | 7 | 100 |
| MIMAT0016092 | ppy-miR-660 | 8 | ....... | 2 | 100 |
| MIMAT0013241 | eca-miR-660 | 8 | ....... | 2 | 100 |
| MIMAT0008308 | ptr-miR-660 | 8 | ....... | 2 | 100 |
| MIMAT0006760 | cfa-miR-660 | 8 | ....... | 2 | 100 |
| MIMAT0006499 | mml-miR-660-5p | 8 | ....... | 2 | 100 |
| MIMAT0004344 | bta-miR-660 | 8 | ....... | 2 | 100 |
| MIMAT0003338 | hsa-miR-660-5p | 8 | ....... | 2 | 100 |
| MIMAT0036802 | oha-miR-1c-3p | 2 | _...... | 7 | 85 |
| MIMAT0036400 | gma-miR9763 | 6 | _...... | 1 | 85 |
| MIMAT0033366 | str-miR-8371-5p | 3 | _...... | 8 | 85 |
| MIMAT0033331 | str-miR-81a-5p | 1 | _...... | 6 | 85 |
| MIMAT0032678 | ssa-miR-729-3p | 2 | _...... | 7 | 85 |
| MIMAT0031718 | bbe-miR-71-3p | 6 | ......_ | 1 | 85 |
| MIMAT0031420 | mmu-miR-8114 | 8 | _...... | 3 | 85 |
| MIMAT0030578 | prd-miR-61-5p | 1 | _...... | 6 | 85 |
| MIMAT0030465 | prd-miR-5960-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029974 | mtr-miR2659k | 3 | _...... | 8 | 85 |
| MIMAT0029973 | mtr-miR2659j | 3 | _...... | 8 | 85 |
| MIMAT0029972 | mtr-miR2659i | 3 | _...... | 8 | 85 |
| MIMAT0029971 | mtr-miR2659h | 3 | _...... | 8 | 85 |
| MIMAT0029970 | mtr-miR2659g | 3 | _...... | 8 | 85 |
| MIMAT0029336 | lja-miR7521 | 3 | _...... | 8 | 85 |
| MIMAT0028603 | mdo-miR-7304-3p | 1 | ......_ | 6 | 85 |
| MIMAT0026316 | ccr-miR-729 | 2 | _...... | 7 | 85 |
| MIMAT0027283 | ppe-miR482c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031166 | ppe-miR482b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0024787 | hbr-miR482a | 3 | _...... | 8 | 85 |
| MIMAT0024784 | hbr-miR2118 | 3 | ......_ | 8 | 85 |
| MIMAT0024321 | mml-miR-1262-3p | 3 | _...... | 8 | 85 |
| MIMAT0032133 | sly-miR6027-5p | 1 | _...... | 6 | 85 |
| MIMAT0022662 | ola-miR-729 | 2 | _...... | 7 | 85 |
| MIMAT0022302 | hsa-miR-5591-3p | 8 | _...... | 3 | 85 |
| MIMAT0022198 | cel-miR-5553-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020564 | osa-miR5076 | 3 | ......_ | 8 | 85 |
| MIMAT0019799 | hsa-miR-4701-3p | 1 | _...... | 6 | 85 |
| MIMAT0019579 | pma-miR-4547-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018041 | vvi-miR3633b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0016186 | ppy-miR-1262 | 1 | _...... | 6 | 85 |
| MIMAT0017596 | aly-miR774a-3p.1 | 7 | _...... | 2 | 85 |
| MIMAT0015090 | hsa-miR-1273d | 8 | _...... | 3 | 85 |
| MIMAT0014977 | hsa-miR-3115 | 3 | _...... | 8 | 85 |
| MIMAT0014903 | mmu-miR-3091-5p | 2 | _...... | 7 | 85 |
| MIMAT0014417 | cqu-miR-279-5p | 2 | _...... | 7 | 85 |
| MIMAT0013608 | bmo-miR-279b-5p | 1 | _...... | 6 | 85 |
| MIMAT0013465 | mtr-miR2659f | 3 | _...... | 8 | 85 |
| MIMAT0013464 | mtr-miR2659e | 3 | _...... | 8 | 85 |
| MIMAT0013463 | mtr-miR2659d | 3 | _...... | 8 | 85 |
| MIMAT0013462 | mtr-miR2659c | 3 | _...... | 8 | 85 |
| MIMAT0013461 | mtr-miR2659b | 3 | _...... | 8 | 85 |
| MIMAT0013460 | mtr-miR2659a | 3 | _...... | 8 | 85 |
| MIMAT0011172 | pvu-miR482-5p | 3 | ......_ | 8 | 85 |
| MIMAT0019181 | tca-miR-279b-5p | 2 | _...... | 7 | 85 |
| MIMAT0019142 | bfl-miR-71-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019125 | tca-miR-279a-5p | 2 | _...... | 7 | 85 |
| MIMAT0007986 | ptr-miR-1262 | 1 | _...... | 6 | 85 |
| MIMAT0005914 | hsa-miR-1262 | 1 | _...... | 6 | 85 |
| MIMAT0005383 | cre-miR1146 | 1 | _...... | 6 | 85 |
| MIMAT0005170 | ppt-miR1053-5p | 2 | _...... | 7 | 85 |
| MIMAT0003758 | dre-miR-729 | 2 | _...... | 7 | 85 |
| MIMAT0026529 | gga-miR-146a-3p | 6 | _...... | 1 | 85 |
