| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aatgtcgg | 8 | ||
| MIMAT0028195 | dev-miR-D20-5p | 1 | ........ | 8 | 100 |
| MIMAT0033461 | str-miR-360-3p | 1 | _....... | 7 | 87 |
| MIMAT0032895 | ppc-miR-2238g-3p | 1 | ......a. | 8 | 87 |
| MIMAT0023178 | gma-miR1516c | 1 | ......t. | 8 | 87 |
| MIMAT0034755 | eca-miR-9175 | 8 | ......__ | 3 | 75 |
| MIMAT0034453 | eca-miR-8925 | 8 | ......__ | 3 | 75 |
| MIMAT0033835 | atr-miR8561.2 | 1 | ......__ | 6 | 75 |
| MIMAT0033834 | atr-miR8561.1 | 7 | ......__ | 2 | 75 |
| MIMAT0033792 | pxy-miR-8537b-3p | 7 | ......__ | 2 | 75 |
| MIMAT0032753 | ssa-miR-7552a-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031254 | stu-miR166d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0030734 | prd-miR-7938-5p | 3 | __...... | 8 | 75 |
| MIMAT0029548 | ipu-miR-7552 | 1 | ......__ | 6 | 75 |
| MIMAT0027268 | pgi-miR6143b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0023263 | osa-miR5795 | 1 | _......_ | 6 | 75 |
| MIMAT0021645 | gma-miR166i-5p | 3 | ......__ | 8 | 75 |
| MIMAT0019488 | pma-miR-181b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018812 | tca-miR-3864-5p | 8 | _......_ | 3 | 75 |
| MIMAT0018752 | tca-miR-3849-5p | 7 | ......__ | 2 | 75 |
| MIMAT0018738 | tca-miR-3845-5p | 3 | ......__ | 8 | 75 |
| MIMAT0018623 | tca-miR-3803-3p | 2 | ......__ | 7 | 75 |
| MIMAT0018111 | hsa-miR-3683 | 8 | _......_ | 3 | 75 |
| MIMAT0016894 | hsa-miR-4262 | 6 | ......__ | 1 | 75 |
| MIMAT0013816 | osa-miR2869 | 8 | __...... | 3 | 75 |
| MIMAT0013399 | mtr-miR2633 | 7 | ......__ | 2 | 75 |
| MIMAT0011848 | bta-miR-2321 | 1 | __...... | 6 | 75 |
| MIMAT0012163 | sme-miR-96b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012136 | sme-miR-87d-5p | 1 | ......__ | 6 | 75 |
| MIMAT0009694 | aqu-miR-2018-5p | 1 | __...... | 6 | 75 |
| MIMAT0026749 | hsa-miR-513b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0005117 | ppt-miR1028a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0020355 | ath-miR868-5p | 3 | _......_ | 8 | 75 |
| MIMAT0015149 | zma-miR166i-5p | 3 | ......__ | 8 | 75 |
