| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | aattctg | 7 | ||
| MIMAT0031597 | bbe-miR-182b-3p | 7 | ....... | 1 | 100 |
| MIMAT0028538 | mdo-miR-7282-5p | 2 | ....... | 8 | 100 |
| MIMAT0020081 | bfl-miR-182b-3p | 7 | ....... | 1 | 100 |
| MIMAT0019936 | hsa-miR-4778-5p | 1 | ....... | 7 | 100 |
| MIMAT0016404 | cin-miR-96-3p | 1 | ....... | 7 | 100 |
| MIMAT0006009 | ptc-miR1447 | 7 | ....... | 1 | 100 |
| MIMAT0019085 | rlcv-miR-rL1-2-5p | 2 | ....... | 8 | 100 |
| MIMAT0000996 | ebv-miR-BHRF1-2-5p | 2 | ....... | 8 | 100 |
| MIMAT0037083 | ssc-miR-219b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0037003 | ssc-miR-9786-3p | 6 | ......_ | 1 | 85 |
| MIMAT0037003 | ssc-miR-9786-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036365 | gma-miR9745 | 6 | ......_ | 1 | 85 |
| MIMAT0033838 | atr-miR8562c | 7 | _...... | 2 | 85 |
| MIMAT0033647 | sma-miR-8464-5p | 1 | _...... | 6 | 85 |
| MIMAT0033408 | str-miR-8378-5p | 2 | _...... | 7 | 85 |
| MIMAT0033287 | ppc-miR-84f-3p | 1 | _...... | 6 | 85 |
| MIMAT0032529 | ssa-miR-219b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0032527 | ssa-miR-219a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0031825 | cpa-miR8134 | 8 | ......_ | 3 | 85 |
| MIMAT0031214 | stu-miR8033-3p | 3 | ......_ | 8 | 85 |
| MIMAT0029893 | mmu-miR-219c-3p | 8 | ......_ | 3 | 85 |
| MIMAT0029807 | mmu-miR-219b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029474 | ipu-miR-219a | 6 | ......_ | 1 | 85 |
| MIMAT0026359 | bma-miR-5860 | 6 | ......_ | 1 | 85 |
| MIMAT0025753 | gga-miR-3524b-3p | 8 | _...... | 3 | 85 |
| MIMAT0025667 | gga-miR-6580-5p | 6 | ......_ | 1 | 85 |
| MIMAT0023346 | hco-miR-5900 | 1 | ......_ | 6 | 85 |
| MIMAT0022147 | osa-miR2275c | 6 | ......_ | 1 | 85 |
| MIMAT0022130 | osa-miR5497 | 6 | _...... | 1 | 85 |
| MIMAT0021612 | gma-miR5038b | 8 | ......_ | 3 | 85 |
| MIMAT0021063 | gma-miR5038a | 8 | ......_ | 3 | 85 |
| MIMAT0020220 | dme-miR-4984-3p | 1 | ......_ | 6 | 85 |
| MIMAT0020218 | dme-miR-4983-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020075 | spu-miR-4852 | 1 | ......_ | 6 | 85 |
| MIMAT0019748 | hsa-miR-219b-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019299 | oar-miR-544-3p | 1 | _...... | 6 | 85 |
| MIMAT0018648 | tca-miR-3813-5p | 2 | _...... | 7 | 85 |
| MIMAT0016654 | cin-miR-4082-3p | 1 | _...... | 6 | 85 |
| MIMAT0016462 | cin-miR-4003a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016374 | gga-miR-3524a | 6 | _...... | 1 | 85 |
| MIMAT0015994 | ppy-miR-544 | 1 | _...... | 6 | 85 |
| MIMAT0014784 | api-miR-3045a | 6 | _...... | 1 | 85 |
| MIMAT0014782 | api-miR-3044 | 3 | ......_ | 8 | 85 |
| MIMAT0013170 | eca-miR-544 | 1 | _...... | 6 | 85 |
| MIMAT0013118 | eca-miR-544b | 1 | _...... | 6 | 85 |
| MIMAT0012831 | rno-miR-544-3p | 1 | _...... | 6 | 85 |
| MIMAT0012350 | dps-miR-2545a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0011835 | bta-miR-2315 | 8 | _...... | 3 | 85 |
| MIMAT0011617 | crm-miR-239a-3p | 6 | _...... | 1 | 85 |
| MIMAT0009910 | cfa-miR-544 | 1 | _...... | 6 | 85 |
| MIMAT0009346 | bta-miR-544a | 1 | _...... | 6 | 85 |
| MIMAT0009345 | bta-miR-544b | 1 | _...... | 6 | 85 |
| MIMAT0012547 | bta-miR-219-3p | 6 | ......_ | 1 | 85 |
| MIMAT0019127 | tca-miR-283-3p | 6 | _...... | 1 | 85 |
| MIMAT0008216 | ptr-miR-544 | 1 | _...... | 6 | 85 |
| MIMAT0009194 | ptr-miR-219-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006729 | cfa-miR-219-3p | 6 | ......_ | 1 | 85 |
| MIMAT0006408 | mml-miR-544 | 1 | _...... | 6 | 85 |
| MIMAT0006246 | mml-miR-219-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007725 | gga-miR-1807 | 7 | _...... | 2 | 85 |
| MIMAT0007708 | gga-miR-1794 | 8 | _...... | 3 | 85 |
| MIMAT0007486 | gga-miR-1619 | 6 | ......_ | 1 | 85 |
| MIMAT0017337 | gma-miR482a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0006900 | oan-miR-219-3p | 6 | ......_ | 1 | 85 |
| MIMAT0005190 | ppt-miR1064-5p | 2 | _...... | 7 | 85 |
| MIMAT0005105 | ppt-miR1023b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0005103 | ppt-miR1023a-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004941 | mmu-miR-544-3p | 1 | _...... | 6 | 85 |
| MIMAT0026681 | mdo-miR-219-1-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003164 | hsa-miR-544a | 1 | _...... | 6 | 85 |
| MIMAT0005446 | rno-miR-219a-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022841 | mmu-miR-219a-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004675 | hsa-miR-219a-2-3p | 6 | ......_ | 1 | 85 |
