| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acaaatgt | 8 | ||
| MIMAT0034647 | eca-miR-9100 | 8 | ......._ | 2 | 87 |
| MIMAT0025122 | mmu-miR-6377 | 8 | ......._ | 2 | 87 |
| MIMAT0018835 | tca-miR-3871-3p | 8 | _....... | 2 | 87 |
| MIMAT0018708 | tca-miR-3837-5p | 8 | _....... | 2 | 87 |
| MIMAT0017915 | aly-miR4227 | 8 | ......._ | 2 | 87 |
| MIMAT0005502 | dme-miR-985-3p | 1 | _....... | 7 | 87 |
| MIMAT0024741 | nta-miR6150 | 8 | ......c. | 1 | 87 |
| MIMAT0011458 | cel-miR-2218b-3p | 8 | ......t. | 1 | 87 |
| MIMAT0037018 | ssc-miR-9800-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036946 | oha-miR-7-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0036610 | tch-miR-9771n | 1 | __...... | 6 | 75 |
| MIMAT0036289 | chi-miR-7-3p | 2 | ......__ | 7 | 75 |
| MIMAT0035904 | chi-miR-105b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035903 | chi-miR-105a | 2 | _......_ | 7 | 75 |
| MIMAT0035527 | bdi-miR530b | 8 | _......_ | 3 | 75 |
| MIMAT0035526 | bdi-miR530a | 8 | _......_ | 3 | 75 |
| MIMAT0035376 | nve-miR-9420 | 3 | ......__ | 8 | 75 |
| MIMAT0033792 | pxy-miR-8537b-3p | 8 | __...... | 3 | 75 |
| MIMAT0033757 | pxy-miR-8519 | 2 | __...... | 7 | 75 |
| MIMAT0033706 | pxy-miR-8496 | 6 | ......__ | 1 | 75 |
| MIMAT0033579 | sma-miR-8437-3p | 8 | __...... | 3 | 75 |
| MIMAT0033519 | sma-miR-8407-3p | 8 | _......_ | 3 | 75 |
| MIMAT0033516 | sma-miR-8406-5p | 1 | _......_ | 6 | 75 |
| MIMAT0033458 | str-miR-8393-5p | 8 | _......_ | 3 | 75 |
| MIMAT0033133 | ppc-miR-8304a-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032753 | ssa-miR-7552a-3p | 1 | __...... | 6 | 75 |
| MIMAT0032696 | ssa-miR-7a-3-3p | 3 | ......__ | 8 | 75 |
| MIMAT0032487 | ssa-miR-203b-3p | 3 | __...... | 8 | 75 |
| MIMAT0031544 | ppe-miR6291c-5p | 8 | __...... | 3 | 75 |
| MIMAT0031243 | stu-miR5303h | 7 | __...... | 2 | 75 |
| MIMAT0030864 | stu-miR7990a | 3 | _......_ | 8 | 75 |
| MIMAT0030863 | stu-miR7989 | 1 | ......__ | 6 | 75 |
| MIMAT0030800 | prd-miR-7957d-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030668 | prd-miR-7957b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030447 | bta-miR-2284ac | 1 | __...... | 6 | 75 |
| MIMAT0030428 | hsa-miR-7853-5p | 2 | _......_ | 7 | 75 |
| MIMAT0029550 | ipu-miR-7554 | 6 | __...... | 1 | 75 |
| MIMAT0031143 | aja-miR-7 | 3 | ......__ | 8 | 75 |
| MIMAT0029299 | mes-miR530b | 8 | _......_ | 3 | 75 |
| MIMAT0029298 | mes-miR530a | 8 | _......_ | 3 | 75 |
| MIMAT0029103 | gga-miR-7474-3p | 6 | ......__ | 1 | 75 |
| MIMAT0029014 | oan-miR-7432-5p | 3 | _......_ | 8 | 75 |
| MIMAT0028876 | mdo-miR-7390-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028788 | mdo-miR-7371h-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028780 | mdo-miR-7371d-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028611 | mdo-miR-7307-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028319 | mml-miR-7183-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026441 | sbi-miR6231-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026182 | cme-miR530a | 8 | _......_ | 3 | 75 |
| MIMAT0026104 | cme-miR530b | 8 | _......_ | 3 | 75 |
| MIMAT0025521 | htu-miR530 | 8 | _......_ | 3 | 75 |
| MIMAT0025242 | ptc-miR6439a | 2 | _......_ | 7 | 75 |
| MIMAT0024762 | nta-miR5303b | 2 | __...... | 7 | 75 |
| MIMAT0024761 | nta-miR5303a | 2 | __...... | 7 | 75 |
| MIMAT0027169 | lus-miR530b | 8 | _......_ | 3 | 75 |
| MIMAT0027162 | lus-miR530a | 8 | _......_ | 3 | 75 |
| MIMAT0024563 | cca-miR6116-3p | 7 | _......_ | 2 | 75 |
| MIMAT0023587 | nta-miR6020b | 1 | __...... | 6 | 75 |
| MIMAT0023584 | nta-miR6020a-5p | 1 | __...... | 6 | 75 |
| MIMAT0023559 | tca-miR-6009-5p | 3 | _......_ | 8 | 75 |
| MIMAT0023524 | ath-miR5014b | 6 | ......__ | 1 | 75 |
| MIMAT0023332 | hco-miR-5893 | 2 | ......__ | 7 | 75 |
| MIMAT0023311 | osa-miR2873c | 1 | _......_ | 6 | 75 |
| MIMAT0023209 | gma-miR530e | 8 | _......_ | 3 | 75 |
| MIMAT0023199 | gma-miR530d | 8 | _......_ | 3 | 75 |
| MIMAT0023197 | gma-miR530c | 8 | _......_ | 3 | 75 |
| MIMAT0023156 | mtr-miR530 | 8 | _......_ | 3 | 75 |
| MIMAT0022793 | sha-miR-7 | 3 | ......__ | 8 | 75 |
| MIMAT0023090 | tur-miR-3931-5p | 6 | ......__ | 1 | 75 |
| MIMAT0022463 | gma-miR530b | 8 | _......_ | 3 | 75 |
| MIMAT0022272 | hsa-miR-664b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022227 | mtr-miR5561-5p | 6 | _......_ | 1 | 75 |
| MIMAT0022192 | cel-miR-5550-3p | 1 | _......_ | 6 | 75 |
| MIMAT0022105 | pti-miR5472 | 2 | __...... | 7 | 75 |
| MIMAT0021985 | aca-miR-7-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021984 | aca-miR-7-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021722 | aca-miR-10c-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032125 | gma-miR5374-3p | 3 | _......_ | 8 | 75 |
| MIMAT0021143 | mtr-miR5210 | 2 | __...... | 7 | 75 |
| MIMAT0020581 | osa-miR5081 | 8 | ......__ | 3 | 75 |
| MIMAT0020565 | bdi-miR1878-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032120 | ath-miR5017-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021003 | gma-miR530a | 8 | _......_ | 3 | 75 |
| MIMAT0021001 | gma-miR482c-5p | 6 | ......__ | 1 | 75 |
| MIMAT0020034 | sko-miR-4827a | 1 | __...... | 6 | 75 |
| MIMAT0020447 | tcc-miR530b | 8 | _......_ | 3 | 75 |
| MIMAT0020446 | tcc-miR530a | 8 | _......_ | 3 | 75 |
| MIMAT0019832 | hsa-miR-4719 | 3 | ......__ | 8 | 75 |
| MIMAT0019787 | hsa-miR-4694-3p | 1 | _......_ | 6 | 75 |
| MIMAT0018483 | csi-miR530b | 8 | _......_ | 3 | 75 |
| MIMAT0018482 | csi-miR530a | 8 | _......_ | 3 | 75 |
| MIMAT0018276 | gma-miR4352b | 3 | __...... | 8 | 75 |
| MIMAT0018239 | gma-miR4350 | 2 | _......_ | 7 | 75 |
| MIMAT0018752 | tca-miR-3849-5p | 8 | __...... | 3 | 75 |
| MIMAT0017939 | aly-miR4248c | 6 | __...... | 1 | 75 |
| MIMAT0017938 | aly-miR4248b | 6 | __...... | 1 | 75 |
| MIMAT0017937 | aly-miR4248a | 6 | __...... | 1 | 75 |
| MIMAT0017921 | aly-miR4232 | 8 | __...... | 3 | 75 |
| MIMAT0016828 | cin-miR-4207-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016806 | cin-miR-4188-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016719 | cin-miR-4125-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016709 | cin-miR-4118-3p | 3 | __...... | 8 | 75 |
| MIMAT0016336 | ahy-miR3512 | 3 | _......_ | 8 | 75 |
| MIMAT0016021 | ppy-miR-579 | 8 | _......_ | 3 | 75 |
| MIMAT0017661 | aly-miR2112-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017595 | aly-miR774a-3p.2 | 8 | ......__ | 3 | 75 |
| MIMAT0015579 | bmo-miR-3384-5p | 3 | __...... | 8 | 75 |
| MIMAT0015544 | bmo-miR-3358 | 6 | ......__ | 1 | 75 |
| MIMAT0014670 | hma-miR-3003b-3p | 3 | __...... | 8 | 75 |
| MIMAT0014668 | hma-miR-3003a-3p | 2 | __...... | 7 | 75 |
| MIMAT0031020 | tgu-miR-7-4-3p | 3 | ......__ | 8 | 75 |
| MIMAT0014632 | tgu-miR-7-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013193 | eca-miR-105 | 2 | _......_ | 7 | 75 |
| MIMAT0013723 | bmo-miR-2814 | 2 | ......__ | 7 | 75 |
| MIMAT0012604 | bmo-miR-2753 | 2 | _......_ | 7 | 75 |
| MIMAT0012593 | aqc-miR530 | 8 | _......_ | 3 | 75 |
| MIMAT0013399 | mtr-miR2633 | 8 | __...... | 3 | 75 |
| MIMAT0013320 | mtr-miR2611 | 7 | ......__ | 2 | 75 |
| MIMAT0013285 | mtr-miR2595 | 7 | __...... | 2 | 75 |
| MIMAT0012390 | dps-miR-2564-5p | 3 | __...... | 8 | 75 |
| MIMAT0011447 | cel-miR-2216-5p | 8 | __...... | 3 | 75 |
| MIMAT0012163 | sme-miR-96b-3p | 7 | __...... | 2 | 75 |
| MIMAT0012137 | sme-miR-124d-5p | 7 | __...... | 2 | 75 |
| MIMAT0011154 | ath-miR2112-5p | 3 | _......_ | 8 | 75 |
| MIMAT0010118 | ame-miR-985 | 2 | __...... | 7 | 75 |
| MIMAT0010198 | cfa-miR-105b | 2 | _......_ | 7 | 75 |
| MIMAT0009879 | cfa-miR-105a | 2 | _......_ | 7 | 75 |
| MIMAT0009822 | nve-miR-2049-5p | 1 | _......_ | 6 | 75 |
| MIMAT0009427 | mmu-miR-669n | 6 | ......__ | 1 | 75 |
| MIMAT0009217 | bta-miR-105a | 2 | _......_ | 7 | 75 |
| MIMAT0009216 | bta-miR-105b | 2 | _......_ | 7 | 75 |
| MIMAT0008252 | ptr-miR-579 | 8 | _......_ | 3 | 75 |
| MIMAT0006440 | mml-miR-579 | 8 | _......_ | 3 | 75 |
| MIMAT0005998 | ptc-miR530b | 8 | _......_ | 3 | 75 |
| MIMAT0005997 | ptc-miR530a | 8 | _......_ | 3 | 75 |
| MIMAT0009195 | oan-miR-7-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007188 | oan-miR-1392-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006987 | oan-miR-7-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026749 | hsa-miR-513b-3p | 1 | __...... | 6 | 75 |
| MIMAT0026744 | hsa-miR-1252-3p | 1 | _......_ | 6 | 75 |
| MIMAT0026740 | hsa-miR-1250-3p | 6 | __...... | 1 | 75 |
| MIMAT0005208 | ppt-miR1077-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005156 | ppt-miR1044-5p | 3 | ......__ | 8 | 75 |
| MIMAT0009206 | hsa-miR-2113 | 6 | ......__ | 1 | 75 |
| MIMAT0003244 | hsa-miR-579-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006787 | osa-miR530-5p | 8 | _......_ | 3 | 75 |
| MIMAT0002457 | mne-miR-105 | 2 | _......_ | 7 | 75 |
| MIMAT0002456 | lla-miR-105 | 2 | _......_ | 7 | 75 |
| MIMAT0002455 | sla-miR-105 | 2 | _......_ | 7 | 75 |
| MIMAT0002454 | mml-miR-105-5p | 2 | _......_ | 7 | 75 |
| MIMAT0002453 | ptr-miR-105 | 2 | _......_ | 7 | 75 |
| MIMAT0002452 | ppa-miR-105 | 2 | _......_ | 7 | 75 |
| MIMAT0002451 | ggo-miR-105 | 2 | _......_ | 7 | 75 |
| MIMAT0002450 | ppy-miR-105 | 2 | _......_ | 7 | 75 |
| MIMAT0002117 | ssc-miR-105-2 | 2 | _......_ | 7 | 75 |
| MIMAT0002116 | ssc-miR-105-1 | 2 | _......_ | 7 | 75 |
| MIMAT0001573 | mghv-miR-M1-9 | 8 | __...... | 3 | 75 |
| MIMAT0004670 | mmu-miR-7a-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004554 | hsa-miR-7-2-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004553 | hsa-miR-7-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0000102 | hsa-miR-105-5p | 2 | _......_ | 7 | 75 |
