| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acacccc | 7 | ||
| MIMAT0032245 | rgl-miR7804-5p | 8 | ....... | 2 | 100 |
| MIMAT0027394 | hsa-miR-6747-5p | 8 | ....... | 2 | 100 |
| MIMAT0012012 | bta-miR-2438 | 8 | ....... | 2 | 100 |
| MIMAT0007601 | gga-miR-1708 | 8 | ....... | 2 | 100 |
| MIMAT0005434 | cre-miR1167 | 7 | ....... | 1 | 100 |
| MIMAT0015220 | hsv1-miR-H1-3p | 2 | ....... | 8 | 100 |
| MIMAT0036157 | chi-miR-342-5p | 7 | _...... | 2 | 85 |
| MIMAT0034989 | efu-miR-9314 | 1 | ......_ | 6 | 85 |
| MIMAT0034824 | efu-miR-9223i | 3 | _...... | 8 | 85 |
| MIMAT0032780 | ath-miR8181 | 8 | _...... | 3 | 85 |
| MIMAT0030717 | prd-miR-7932-3p | 8 | ......_ | 3 | 85 |
| MIMAT0030544 | prd-miR-7887-5p | 6 | _...... | 1 | 85 |
| MIMAT0028744 | mdo-miR-1544b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028117 | hsa-miR-7110-5p | 8 | _...... | 3 | 85 |
| MIMAT0027916 | mmu-miR-7006-5p | 8 | _...... | 3 | 85 |
| MIMAT0027878 | mmu-miR-6988-5p | 6 | _...... | 1 | 85 |
| MIMAT0027858 | mmu-miR-6978-5p | 8 | _...... | 3 | 85 |
| MIMAT0027828 | mmu-miR-6964-5p | 8 | _...... | 3 | 85 |
| MIMAT0027786 | mmu-miR-6943-5p | 7 | _...... | 2 | 85 |
| MIMAT0027762 | mmu-miR-6931-5p | 7 | _...... | 2 | 85 |
| MIMAT0027631 | hsa-miR-6865-3p | 1 | ......_ | 6 | 85 |
| MIMAT0027586 | hsa-miR-6842-5p | 8 | _...... | 3 | 85 |
| MIMAT0027538 | hsa-miR-6819-5p | 8 | _...... | 3 | 85 |
| MIMAT0027524 | hsa-miR-6812-5p | 8 | _...... | 3 | 85 |
| MIMAT0027505 | hsa-miR-6802-3p | 3 | _...... | 8 | 85 |
| MIMAT0027464 | hsa-miR-6782-5p | 8 | _...... | 3 | 85 |
| MIMAT0027404 | hsa-miR-6752-5p | 8 | _...... | 3 | 85 |
| MIMAT0027375 | hsa-miR-6737-5p | 8 | _...... | 3 | 85 |
| MIMAT0025688 | gga-miR-6594-5p | 8 | _...... | 3 | 85 |
| MIMAT0023922 | cgr-miR-342-5p | 7 | _...... | 2 | 85 |
| MIMAT0026469 | tur-miR-5728-2-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021419 | asu-miR-81b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019737 | hsa-miR-4664-5p | 7 | _...... | 2 | 85 |
| MIMAT0019715 | hsa-miR-4651 | 7 | _...... | 2 | 85 |
| MIMAT0019700 | hsa-miR-4640-3p | 1 | _...... | 6 | 85 |
| MIMAT0019653 | pma-miR-4619 | 1 | _...... | 6 | 85 |
| MIMAT0019017 | hsa-miR-4483 | 6 | _...... | 1 | 85 |
| MIMAT0018904 | tca-miR-3900-5p | 8 | _...... | 3 | 85 |
| MIMAT0018658 | tca-miR-3817-5p | 8 | _...... | 3 | 85 |
| MIMAT0016581 | cin-miR-4046-5p | 8 | ......_ | 3 | 85 |
| MIMAT0016049 | ppy-miR-608 | 7 | _...... | 2 | 85 |
| MIMAT0015844 | ppy-miR-342-5p | 7 | _...... | 2 | 85 |
| MIMAT0014907 | mmu-miR-3093-5p | 3 | _...... | 8 | 85 |
| MIMAT0015366 | zma-miR1432-3p | 6 | ......_ | 1 | 85 |
| MIMAT0013136 | eca-miR-342-5p | 7 | _...... | 2 | 85 |
| MIMAT0013732 | bmo-miR-2780b | 8 | ......_ | 3 | 85 |
| MIMAT0013669 | bmo-miR-2780a-5p | 8 | ......_ | 3 | 85 |
| MIMAT0012471 | dsi-miR-965-5p | 6 | _...... | 1 | 85 |
| MIMAT0012281 | dps-miR-307b | 3 | ......_ | 8 | 85 |
| MIMAT0012195 | dme-miR-307b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012002 | bta-miR-2431-3p | 1 | _...... | 6 | 85 |
| MIMAT0011817 | bta-miR-2305 | 8 | _...... | 3 | 85 |
| MIMAT0011803 | bta-miR-2295 | 8 | _...... | 3 | 85 |
| MIMAT0011212 | mmu-miR-2136 | 8 | ......_ | 3 | 85 |
| MIMAT0006282 | mml-miR-342-5p | 7 | _...... | 2 | 85 |
| MIMAT0006814 | oan-miR-1331 | 7 | _...... | 2 | 85 |
| MIMAT0005394 | cre-miR1151a-3p | 8 | _...... | 3 | 85 |
| MIMAT0003276 | hsa-miR-608 | 7 | _...... | 2 | 85 |
| MIMAT0004694 | hsa-miR-342-5p | 7 | _...... | 2 | 85 |
| MIMAT0004653 | mmu-miR-342-5p | 7 | _...... | 2 | 85 |
| MIMAT0004652 | rno-miR-342-5p | 7 | _...... | 2 | 85 |
| MIMAT0015095 | cel-miR-42-5p | 8 | ......_ | 3 | 85 |
