| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acacgaga | 8 | ||
| MIMAT0019615 | pma-miR-4582 | 8 | ........ | 1 | 100 |
| MIMAT0013962 | bhv1-miR-B1 | 1 | ........ | 8 | 100 |
| MIMAT0031423 | mmu-miR-8117 | 8 | ......._ | 2 | 87 |
| MIMAT0016936 | bta-miR-3601 | 7 | _....... | 1 | 87 |
| MIMAT0020717 | bdi-miR5173-5p | 8 | .t...... | 1 | 87 |
| MIMAT0037300 | ame-miR-9895 | 6 | ......__ | 1 | 75 |
| MIMAT0037276 | ame-miR-9872 | 2 | __...... | 7 | 75 |
| MIMAT0036012 | chi-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0035689 | bra-miR9565-5p | 6 | __...... | 1 | 75 |
| MIMAT0033280 | ppc-miR-8359-5p | 1 | __...... | 6 | 75 |
| MIMAT0033213 | ppc-miR-8334-3p | 3 | __...... | 8 | 75 |
| MIMAT0031239 | stu-miR1919-3p | 1 | __...... | 6 | 75 |
| MIMAT0030687 | prd-miR-7922-3p | 7 | __...... | 2 | 75 |
| MIMAT0032242 | rgl-miR7801 | 2 | __...... | 7 | 75 |
| MIMAT0030356 | hhi-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0030178 | bdi-miR7725a-5p | 3 | __...... | 8 | 75 |
| MIMAT0029442 | ipu-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0026245 | ccr-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0026083 | cme-miR858 | 6 | __...... | 1 | 75 |
| MIMAT0027449 | hsa-miR-6774-3p | 6 | ......__ | 1 | 75 |
| MIMAT0023815 | cgr-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0021816 | aca-miR-187-3p | 6 | ......__ | 1 | 75 |
| MIMAT0021685 | sbi-miR5387a | 3 | ......__ | 8 | 75 |
| MIMAT0021465 | asu-miR-57-3p | 1 | ......__ | 6 | 75 |
| MIMAT0020587 | ssc-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0019693 | hsa-miR-4636 | 8 | _......_ | 3 | 75 |
| MIMAT0018610 | ame-miR-3741 | 1 | __...... | 6 | 75 |
| MIMAT0018101 | hsa-miR-3677-3p | 6 | _......_ | 1 | 75 |
| MIMAT0016750 | cin-miR-4147-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016423 | cin-miR-92d-5p | 8 | ......__ | 3 | 75 |
| MIMAT0017762 | esi-miR3460-3p | 2 | _......_ | 7 | 75 |
| MIMAT0015509 | bmo-miR-3322 | 6 | __...... | 1 | 75 |
| MIMAT0014758 | api-miR-3022 | 6 | __...... | 1 | 75 |
| MIMAT0014567 | tgu-miR-187-3p | 6 | ......__ | 1 | 75 |
| MIMAT0012999 | eca-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0012728 | iltv-miR-I5-5p | 8 | __...... | 3 | 75 |
| MIMAT0011796 | bta-miR-2289 | 6 | ......__ | 1 | 75 |
| MIMAT0011305 | dre-miR-2198 | 8 | _......_ | 3 | 75 |
| MIMAT0010004 | bfl-miR-2075 | 7 | __...... | 2 | 75 |
| MIMAT0009843 | cfa-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0009248 | bta-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0007913 | sly-miR1919c-3p | 1 | __...... | 6 | 75 |
| MIMAT0007912 | sly-miR1919b | 1 | __...... | 6 | 75 |
| MIMAT0007911 | sly-miR1919a | 1 | __...... | 6 | 75 |
| MIMAT0006221 | mml-miR-187-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026779 | gga-miR-1703-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007267 | oan-miR-187-3p | 6 | ......__ | 1 | 75 |
| MIMAT0006947 | oan-miR-1354-5p | 7 | _......_ | 2 | 75 |
| MIMAT0005557 | mcmv-miR-m108-1-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005229 | smo-miR536 | 6 | ......__ | 1 | 75 |
| MIMAT0004120 | mdo-miR-187-3p | 6 | ......__ | 1 | 75 |
| MIMAT0003614 | xtr-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0002931 | tni-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0002930 | fru-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0002518 | ppa-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0002517 | mne-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0002516 | ppy-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0002515 | ggo-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0001274 | dre-miR-187 | 6 | ......__ | 1 | 75 |
| MIMAT0001124 | gga-miR-187-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000864 | rno-miR-187-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000262 | hsa-miR-187-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000216 | mmu-miR-187-3p | 6 | ......__ | 1 | 75 |
