| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acatggac | 8 | ||
| MIMAT0035862 | bra-miR6032-5p | 2 | ......._ | 8 | 87 |
| MIMAT0035326 | gsa-miR-9391-5p | 8 | ......._ | 2 | 87 |
| MIMAT0034204 | gra-miR8768 | 8 | ......._ | 2 | 87 |
| MIMAT0034168 | gra-miR7494d | 2 | _....... | 8 | 87 |
| MIMAT0033283 | ppc-miR-8360-3p | 8 | _....... | 2 | 87 |
| MIMAT0028862 | mdo-miR-7386m-5p | 1 | _....... | 7 | 87 |
| MIMAT0028432 | mmu-miR-7232-5p | 2 | ......._ | 8 | 87 |
| MIMAT0025759 | gga-miR-6658-3p | 1 | _....... | 7 | 87 |
| MIMAT0021546 | asu-miR-36f-5p | 1 | ......._ | 7 | 87 |
| MIMAT0021141 | mtr-miR5208c | 2 | ......._ | 8 | 87 |
| MIMAT0021140 | mtr-miR5208b | 2 | ......._ | 8 | 87 |
| MIMAT0021139 | mtr-miR5208a | 2 | ......._ | 8 | 87 |
| MIMAT0019982 | hsa-miR-4802-3p | 2 | ......._ | 8 | 87 |
| MIMAT0019826 | hsa-miR-4716-5p | 7 | ......._ | 1 | 87 |
| MIMAT0015569 | bmo-miR-3378-5p | 8 | ......._ | 2 | 87 |
| MIMAT0015565 | bmo-miR-3375-5p | 7 | ......._ | 1 | 87 |
| MIMAT0014465 | tgu-miR-146a-3p | 8 | _....... | 2 | 87 |
| MIMAT0007736 | gga-miR-146c-3p | 8 | _....... | 2 | 87 |
| MIMAT0030972 | stu-miR8048-3p | 1 | .g...... | 8 | 87 |
| MIMAT0025652 | gga-miR-6572-3p | 1 | .g...... | 8 | 87 |
| MIMAT0010029 | mtr-miR1510b-3p | 1 | ......t. | 8 | 87 |
| MIMAT0009792 | nve-miR-2035-5p | 1 | ......t. | 8 | 87 |
| MIMAT0032033 | gma-miR1531-5p | 1 | .t...... | 8 | 87 |
| MIMAT0036936 | oha-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0034945 | efu-miR-9288 | 8 | ......__ | 3 | 75 |
| MIMAT0034858 | efu-miR-9243a | 8 | _......_ | 3 | 75 |
| MIMAT0034731 | eca-miR-9155 | 6 | _......_ | 1 | 75 |
| MIMAT0034182 | gra-miR8771d | 8 | ......__ | 3 | 75 |
| MIMAT0034103 | gra-miR8714 | 1 | __...... | 6 | 75 |
| MIMAT0033972 | esi-miR8623b | 1 | _......_ | 6 | 75 |
| MIMAT0033085 | ppc-miR-8288-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032525 | ssa-miR-218-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032377 | ssa-miR-146d-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030670 | prd-miR-7917-5p | 8 | __...... | 3 | 75 |
| MIMAT0030445 | bta-miR-7863 | 1 | __...... | 6 | 75 |
| MIMAT0029046 | gga-miR-7446-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029008 | oan-miR-7429-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028846 | mdo-miR-7386j-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028696 | mdo-miR-7343-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028197 | dev-miR-D21-3p | 7 | _......_ | 2 | 75 |
| MIMAT0027705 | mmu-miR-6902-3p | 6 | ......__ | 1 | 75 |
| MIMAT0025758 | gga-miR-6657-3p | 1 | ......__ | 6 | 75 |
| MIMAT0025234 | ptc-miR482d-5p | 3 | ......__ | 8 | 75 |
| MIMAT0025215 | ptc-miR6425d-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025215 | ptc-miR6425d-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025208 | ptc-miR6425c-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025208 | ptc-miR6425c-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025199 | ptc-miR6425b-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025199 | ptc-miR6425b-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025191 | ptc-miR6425a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025191 | ptc-miR6425a-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025161 | mmu-miR-6408 | 2 | ......__ | 7 | 75 |
| MIMAT0025158 | mmu-miR-496b | 3 | ......__ | 8 | 75 |
| MIMAT0024546 | cca-miR6109 | 1 | __...... | 6 | 75 |
| MIMAT0023592 | sly-miR6023 | 7 | _......_ | 2 | 75 |
| MIMAT0023591 | stu-miR6023 | 7 | _......_ | 2 | 75 |
| MIMAT0023271 | osa-miR5802 | 1 | __...... | 6 | 75 |
| MIMAT0022466 | gma-miR5678 | 7 | _......_ | 2 | 75 |
| MIMAT0022453 | gma-miR5671a | 1 | _......_ | 6 | 75 |
| MIMAT0022276 | hsa-miR-5581-3p | 7 | _......_ | 2 | 75 |
| MIMAT0021976 | aca-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0021881 | aca-miR-218-3p | 3 | ......__ | 8 | 75 |
| MIMAT0021598 | asu-miR-5358b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021577 | asu-miR-5357-3p | 2 | __...... | 7 | 75 |
| MIMAT0021177 | mtr-miR5219 | 2 | _......_ | 7 | 75 |
| MIMAT0019830 | hsa-miR-4717-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019662 | pma-miR-4628 | 8 | __...... | 3 | 75 |
| MIMAT0018388 | ngi-miR-281 | 3 | _......_ | 8 | 75 |
| MIMAT0018309 | gma-miR4394 | 2 | __...... | 7 | 75 |
| MIMAT0027036 | hsa-miR-3912-5p | 8 | __...... | 3 | 75 |
| MIMAT0017959 | ssc-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0016810 | cin-miR-4192-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016732 | cin-miR-4135-3p | 7 | ......__ | 2 | 75 |
| MIMAT0016698 | cin-miR-4110-5p | 8 | ......__ | 3 | 75 |
| MIMAT0015909 | ppy-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0015649 | bhv1-miR-B10 | 1 | ......__ | 6 | 75 |
| MIMAT0017717 | aly-miR3442-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017690 | aly-miR848-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015511 | bmo-miR-3324 | 6 | _......_ | 1 | 75 |
| MIMAT0014873 | mmu-miR-3082-3p | 2 | ......__ | 7 | 75 |
| MIMAT0026996 | tgu-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026984 | tgu-miR-218-3p | 3 | ......__ | 8 | 75 |
| MIMAT0019185 | rlcv-miR-rL1-17-5p | 3 | __...... | 8 | 75 |
| MIMAT0012944 | eca-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017356 | rno-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0010028 | mtr-miR1510b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0009753 | aqu-miR-2021-5p | 1 | _......_ | 6 | 75 |
| MIMAT0006350 | mml-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0007495 | gga-miR-1626-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007393 | gma-miR1531-3p | 8 | __...... | 3 | 75 |
| MIMAT0005985 | mdv1-miR-M13 | 2 | _......_ | 7 | 75 |
| MIMAT0007205 | oan-miR-1400-5p | 2 | __...... | 7 | 75 |
| MIMAT0006816 | oan-miR-218-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006810 | oan-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005429 | cre-miR1170.1 | 7 | __...... | 2 | 75 |
| MIMAT0005423 | cre-miR1166.2 | 8 | __...... | 3 | 75 |
| MIMAT0026734 | hsa-miR-942-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004270 | ath-miR848 | 3 | ......__ | 8 | 75 |
| MIMAT0017261 | mmu-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0026633 | gga-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004764 | hsa-miR-490-5p | 2 | _......_ | 7 | 75 |
| MIMAT0017162 | rno-miR-218a-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004665 | mmu-miR-218-1-3p | 3 | ......__ | 8 | 75 |
| MIMAT0015099 | cel-miR-51-3p | 1 | _......_ | 6 | 75 |
