| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acccaccc | 8 | ||
| MIMAT0019091 | rlcv-miR-rL1-15-5p | 1 | ........ | 8 | 100 |
| MIMAT0035732 | rno-miR-1896 | 8 | ......._ | 2 | 87 |
| MIMAT0031616 | bbe-miR-2058-3p | 7 | _....... | 1 | 87 |
| MIMAT0030408 | ptc-miR7836 | 8 | _....... | 2 | 87 |
| MIMAT0030393 | ptc-miR7837 | 8 | _....... | 2 | 87 |
| MIMAT0031050 | mdo-miR-92a-2-5p | 7 | _....... | 1 | 87 |
| MIMAT0027903 | mmu-miR-7000-3p | 2 | ......._ | 8 | 87 |
| MIMAT0027620 | hsa-miR-6769b-5p | 8 | ......._ | 2 | 87 |
| MIMAT0027438 | hsa-miR-6769a-5p | 8 | ......._ | 2 | 87 |
| MIMAT0027432 | hsa-miR-6766-5p | 8 | _....... | 2 | 87 |
| MIMAT0027412 | hsa-miR-6756-5p | 8 | _....... | 2 | 87 |
| MIMAT0016771 | cin-miR-4163-3p | 1 | ......._ | 7 | 87 |
| MIMAT0017544 | aly-miR394a-3p | 8 | ......._ | 2 | 87 |
| MIMAT0019167 | bfl-miR-2058-3p | 7 | _....... | 1 | 87 |
| MIMAT0026809 | mml-miR-92a-5p | 7 | _....... | 1 | 87 |
| MIMAT0006857 | oan-miR-92a-1-5p | 7 | _....... | 1 | 87 |
| MIMAT0004508 | hsa-miR-92a-2-5p | 7 | _....... | 1 | 87 |
| MIMAT0037043 | ssc-miR-9825-5p | 8 | .t...... | 1 | 87 |
| MIMAT0030085 | bdi-miR159b-3p.2 | 1 | .t...... | 8 | 87 |
| MIMAT0037235 | ata-miR394-3p | 7 | _......_ | 2 | 75 |
| MIMAT0036912 | oha-miR-363-5p | 7 | __...... | 2 | 75 |
| MIMAT0036874 | oha-miR-2985b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036874 | oha-miR-2985b-5p | 8 | __...... | 3 | 75 |
| MIMAT0036871 | oha-miR-2985a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0036871 | oha-miR-2985a-5p | 8 | __...... | 3 | 75 |
| MIMAT0036175 | chi-miR-363-5p | 7 | __...... | 2 | 75 |
| MIMAT0035438 | sly-miR394-3p | 7 | _......_ | 2 | 75 |
| MIMAT0034905 | efu-miR-9272 | 3 | _......_ | 8 | 75 |
| MIMAT0033755 | pxy-miR-279a | 7 | ......__ | 2 | 75 |
| MIMAT0033626 | sma-miR-8457-5p | 7 | __...... | 2 | 75 |
| MIMAT0033494 | str-miR-8400-5p | 7 | ......__ | 2 | 75 |
| MIMAT0032950 | ppc-miR-2235c-5p | 1 | __...... | 6 | 75 |
| MIMAT0031716 | bbe-miR-705-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031659 | bbe-miR-278-5p | 8 | _......_ | 3 | 75 |
| MIMAT0031614 | bbe-miR-2057-3p | 6 | __...... | 1 | 75 |
| MIMAT0030821 | prd-miR-7961-3p | 3 | _......_ | 8 | 75 |
| MIMAT0030544 | prd-miR-7887-5p | 7 | __...... | 2 | 75 |
| MIMAT0032219 | lva-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032172 | pmi-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028956 | oan-miR-2985-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028956 | oan-miR-2985-5p | 8 | __...... | 3 | 75 |
| MIMAT0028864 | mdo-miR-7386n-5p | 7 | __...... | 2 | 75 |
| MIMAT0028630 | mdo-miR-7315-5p | 6 | ......__ | 1 | 75 |
| MIMAT0028370 | mml-miR-7203-5p | 7 | __...... | 2 | 75 |
| MIMAT0028264 | mml-miR-1180-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028126 | hsa-miR-7114-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028062 | mmu-miR-7078-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027985 | mmu-miR-7040-3p | 3 | __...... | 8 | 75 |
| MIMAT0027878 | mmu-miR-6988-5p | 7 | __...... | 2 | 75 |
| MIMAT0027826 | mmu-miR-6963-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027804 | mmu-miR-6952-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027762 | mmu-miR-6931-5p | 8 | __...... | 3 | 75 |
| MIMAT0027486 | hsa-miR-6793-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027472 | hsa-miR-6786-5p | 8 | _......_ | 3 | 75 |
| MIMAT0027418 | hsa-miR-6759-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027396 | hsa-miR-6748-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027391 | hsa-miR-6745 | 7 | __...... | 2 | 75 |
| MIMAT0027383 | hsa-miR-6741-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025705 | gga-miR-6610-3p | 7 | __...... | 2 | 75 |
| MIMAT0032138 | sma-miR-61-5p | 7 | ......__ | 2 | 75 |
| MIMAT0024960 | hme-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0024804 | hvu-miR6180 | 7 | __...... | 2 | 75 |
| MIMAT0024568 | bta-miR-1260b | 3 | _......_ | 8 | 75 |
| MIMAT0024451 | mse-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0024370 | ppy-miR-1260b | 3 | _......_ | 8 | 75 |
| MIMAT0024319 | mml-miR-1260b | 3 | _......_ | 8 | 75 |
| MIMAT0024318 | mml-miR-3151 | 8 | __...... | 3 | 75 |
| MIMAT0024259 | ggo-miR-3151 | 6 | _......_ | 1 | 75 |
| MIMAT0024240 | ggo-miR-1260b | 3 | _......_ | 8 | 75 |
| MIMAT0024238 | ggo-miR-654 | 7 | _......_ | 2 | 75 |
| MIMAT0024066 | ptr-miR-1260b | 3 | _......_ | 8 | 75 |
| MIMAT0024031 | ptr-miR-3151 | 6 | _......_ | 1 | 75 |
| MIMAT0023804 | cgr-miR-181d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0023746 | cgr-miR-1260 | 3 | _......_ | 8 | 75 |
| MIMAT0023650 | bna-miR6030 | 2 | __...... | 7 | 75 |
| MIMAT0023604 | nta-miR482b-5p | 7 | ......__ | 2 | 75 |
| MIMAT0031163 | stu-miR482e-5p | 7 | ......__ | 2 | 75 |
| MIMAT0023539 | ame-miR-6000a-5p | 7 | ......__ | 2 | 75 |
| MIMAT0023109 | tur-miR-263b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0023031 | tur-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022406 | ath-miR5644 | 6 | ......__ | 1 | 75 |
| MIMAT0022328 | cin-miR-5596b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0022316 | cin-miR-5596a-3p | 8 | __...... | 3 | 75 |
| MIMAT0020765 | sly-miR482e-5p | 7 | ......__ | 2 | 75 |
| MIMAT0020708 | bdi-miR5166 | 3 | _......_ | 8 | 75 |
| MIMAT0022989 | mmu-miR-5134-3p | 8 | __...... | 3 | 75 |
| MIMAT0020134 | cel-miR-4927 | 6 | ......__ | 1 | 75 |
| MIMAT0019922 | hsa-miR-4769-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019715 | hsa-miR-4651 | 8 | __...... | 3 | 75 |
| MIMAT0019660 | pma-miR-4626 | 7 | ......__ | 2 | 75 |
| MIMAT0019324 | oar-miR-541-3p | 7 | _......_ | 2 | 75 |
| MIMAT0019017 | hsa-miR-4483 | 7 | __...... | 2 | 75 |
| MIMAT0018999 | hsa-miR-4472 | 6 | _......_ | 1 | 75 |
| MIMAT0018966 | hsa-miR-4447 | 6 | _......_ | 1 | 75 |
| MIMAT0018929 | hsa-miR-4417 | 6 | _......_ | 1 | 75 |
| MIMAT0019229 | hsa-miR-3940-5p | 6 | ......__ | 1 | 75 |
| MIMAT0018336 | gma-miR394b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0018820 | tca-miR-750-5p | 6 | __...... | 1 | 75 |
| MIMAT0018745 | tca-miR-3848-3p | 3 | ......__ | 8 | 75 |
| MIMAT0018521 | ame-miR-3751 | 6 | __...... | 1 | 75 |
| MIMAT0016930 | isc-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0016655 | cin-miR-4083-5p | 6 | ......__ | 1 | 75 |
| MIMAT0017885 | rno-miR-702-3p | 3 | _......_ | 8 | 75 |
| MIMAT0016385 | gga-miR-3534 | 7 | ......__ | 2 | 75 |
| MIMAT0016215 | ppy-miR-1293 | 7 | __...... | 2 | 75 |
| MIMAT0016184 | ppy-miR-1260a | 3 | _......_ | 8 | 75 |
| MIMAT0016160 | ppy-miR-1225-5p | 6 | ......__ | 1 | 75 |
| MIMAT0016159 | ppy-miR-1224-3p | 2 | _......_ | 7 | 75 |
| MIMAT0016087 | ppy-miR-654-5p | 7 | _......_ | 2 | 75 |
| MIMAT0016049 | ppy-miR-608 | 8 | __...... | 3 | 75 |
| MIMAT0015990 | ppy-miR-541 | 7 | _......_ | 2 | 75 |
| MIMAT0017692 | aly-miR851-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015041 | hsa-miR-1260b | 3 | _......_ | 8 | 75 |
| MIMAT0015024 | hsa-miR-3151-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014723 | api-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0014495 | tgu-miR-2985 | 6 | ......__ | 1 | 75 |
| MIMAT0014495 | tgu-miR-2985 | 8 | __...... | 3 | 75 |
| MIMAT0014377 | cqu-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0014352 | hsv2-miR-H9-3p | 3 | _......_ | 8 | 75 |
| MIMAT0014238 | aae-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0017375 | ssc-miR-181d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0013855 | bta-miR-2897 | 6 | _......_ | 1 | 75 |
| MIMAT0013846 | bta-miR-2888 | 6 | _......_ | 1 | 75 |
| MIMAT0013838 | bta-miR-669 | 7 | ......__ | 2 | 75 |
| MIMAT0013168 | eca-miR-541 | 7 | _......_ | 2 | 75 |
| MIMAT0026951 | mml-miR-541-3p | 7 | _......_ | 2 | 75 |
| MIMAT0012755 | mdo-miR-363 | 7 | __...... | 2 | 75 |
| MIMAT0012653 | dpu-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0012427 | dsi-miR-1003-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012425 | dsi-miR-1012-5p | 6 | ......__ | 1 | 75 |
| MIMAT0011924 | bta-miR-2378 | 7 | ......__ | 2 | 75 |
| MIMAT0010135 | bfl-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0010013 | bfl-miR-705 | 6 | _......_ | 1 | 75 |
| MIMAT0009674 | spu-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009640 | sko-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0009592 | lgi-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0009538 | cte-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0009164 | bmo-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0009402 | mmu-miR-1938 | 7 | _......_ | 2 | 75 |
| MIMAT0009343 | bta-miR-541 | 7 | _......_ | 2 | 75 |
| MIMAT0009086 | dya-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0009029 | dwi-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0008937 | dvi-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0008891 | dsi-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0008781 | dse-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0008726 | dpe-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0008676 | dmo-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0008597 | dgr-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0008530 | der-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0008470 | dan-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0008012 | ptr-miR-1293 | 7 | __...... | 2 | 75 |
| MIMAT0011147 | xla-miR-363 | 7 | __...... | 2 | 75 |
| MIMAT0007764 | osa-miR1846d-5p | 2 | _......_ | 7 | 75 |
| MIMAT0006495 | mml-miR-654-5p | 7 | _......_ | 2 | 75 |
| MIMAT0026855 | mml-miR-363-5p | 7 | __...... | 2 | 75 |
| MIMAT0007457 | gga-miR-1594 | 7 | _......_ | 2 | 75 |
| MIMAT0007445 | gga-miR-1584 | 8 | __...... | 3 | 75 |
| MIMAT0015245 | cin-miR-1473-5p | 1 | ......__ | 6 | 75 |
| MIMAT0007186 | oan-miR-1391-3p | 3 | _......_ | 8 | 75 |
| MIMAT0007027 | oan-miR-1364 | 3 | __...... | 8 | 75 |
| MIMAT0006919 | oan-miR-1346 | 6 | ......__ | 1 | 75 |
| MIMAT0006859 | oan-miR-363-5p | 7 | __...... | 2 | 75 |
| MIMAT0006814 | oan-miR-1331 | 8 | __...... | 3 | 75 |
| MIMAT0005911 | hsa-miR-1260a | 3 | _......_ | 8 | 75 |
| MIMAT0005883 | hsa-miR-1293 | 7 | __...... | 2 | 75 |
| MIMAT0005585 | mml-miR-1230 | 6 | ......__ | 1 | 75 |
| MIMAT0005585 | mml-miR-1230 | 8 | __...... | 3 | 75 |
| MIMAT0022942 | hsa-miR-1229-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005574 | mml-miR-1225-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005572 | hsa-miR-1225-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005571 | mml-miR-1224-3p | 2 | _......_ | 7 | 75 |
| MIMAT0005569 | ptr-miR-1224-3p | 2 | _......_ | 7 | 75 |
| MIMAT0026735 | hsa-miR-1180-5p | 3 | ......__ | 8 | 75 |
| MIMAT0005481 | dme-miR-966-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004920 | hsa-miR-541-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017264 | mmu-miR-181d-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004274 | ath-miR851-3p | 7 | __...... | 2 | 75 |
| MIMAT0004240 | ath-miR823 | 7 | __...... | 2 | 75 |
| MIMAT0004011 | sme-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0003701 | xtr-miR-363-5p | 7 | __...... | 2 | 75 |
| MIMAT0003495 | mmu-miR-705 | 6 | _......_ | 1 | 75 |
| MIMAT0003492 | mmu-miR-702-3p | 3 | _......_ | 8 | 75 |
| MIMAT0022930 | mmu-miR-698-5p | 7 | ......__ | 2 | 75 |
| MIMAT0017231 | mmu-miR-1224-3p | 2 | _......_ | 7 | 75 |
| MIMAT0005459 | hsa-miR-1224-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019087 | rlcv-miR-rL1-8-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003330 | hsa-miR-654-5p | 7 | _......_ | 2 | 75 |
| MIMAT0003276 | hsa-miR-608 | 8 | __...... | 3 | 75 |
| MIMAT0003209 | rno-miR-363-5p | 7 | __...... | 2 | 75 |
| MIMAT0031992 | dre-miR-363-5p | 7 | __...... | 2 | 75 |
| MIMAT0015163 | zma-miR394b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015162 | zma-miR394a-3p | 7 | _......_ | 2 | 75 |
| MIMAT0001511 | aga-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0001482 | ame-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0001242 | dps-miR-278 | 8 | _......_ | 3 | 75 |
| MIMAT0031907 | ath-miR394b-3p | 7 | _......_ | 2 | 75 |
| MIMAT0017108 | rno-miR-92a-2-5p | 7 | _......_ | 2 | 75 |
| MIMAT0003385 | hsa-miR-363-5p | 7 | __...... | 2 | 75 |
| MIMAT0004635 | mmu-miR-92a-2-5p | 7 | _......_ | 2 | 75 |
| MIMAT0020807 | dme-miR-279-5p | 7 | ......__ | 2 | 75 |
| MIMAT0000339 | dme-miR-278-3p | 8 | _......_ | 3 | 75 |
| MIMAT0015095 | cel-miR-42-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015094 | cel-miR-37-5p | 7 | ......__ | 2 | 75 |
