| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acccagct | 8 | ||
| MIMAT0011991 | bta-miR-320b | 8 | ........ | 1 | 100 |
| MIMAT0002184 | kshv-miR-K12-9-5p | 1 | ........ | 8 | 100 |
| MIMAT0036893 | oha-miR-30c-2-3p | 7 | _....... | 1 | 87 |
| MIMAT0034702 | eca-miR-8908e | 2 | ......._ | 8 | 87 |
| MIMAT0029906 | mmu-miR-7688-5p | 8 | _....... | 2 | 87 |
| MIMAT0029845 | mmu-miR-7669-3p | 8 | _....... | 2 | 87 |
| MIMAT0022297 | hsa-miR-5589-5p | 8 | ......._ | 2 | 87 |
| MIMAT0016342 | ahy-miR3516 | 7 | ......._ | 1 | 87 |
| MIMAT0017745 | esi-miR3454g-5p | 2 | ......._ | 8 | 87 |
| MIMAT0012241 | dps-miR-311-5p | 8 | _....... | 2 | 87 |
| MIMAT0034794 | efu-miR-9206 | 1 | .g...... | 8 | 87 |
| MIMAT0028836 | mdo-miR-7386b-5p | 8 | .t...... | 1 | 87 |
| MIMAT0028631 | mdo-miR-7315-3p | 1 | ......a. | 8 | 87 |
| MIMAT0027386 | hsa-miR-6742-3p | 8 | ......g. | 1 | 87 |
| MIMAT0019846 | hsa-miR-4726-3p | 1 | ......g. | 8 | 87 |
| MIMAT0009579 | lgi-miR-133-5p | 8 | .a...... | 1 | 87 |
| MIMAT0019116 | tca-miR-133-5p | 8 | .a...... | 1 | 87 |
| MIMAT0031079 | mml-miR-29b-2-5p | 8 | .a...... | 1 | 87 |
| MIMAT0026803 | mml-miR-29b-1-5p | 8 | .a...... | 1 | 87 |
| MIMAT0031072 | gga-miR-29b-2-5p | 8 | .a...... | 1 | 87 |
| MIMAT0026488 | gga-miR-29b-1-5p | 8 | .a...... | 1 | 87 |
| MIMAT0020806 | dme-miR-133-5p | 8 | .a...... | 1 | 87 |
| MIMAT0036926 | oha-miR-449a-3p | 2 | __...... | 7 | 75 |
| MIMAT0036813 | oha-miR-204-1-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036791 | oha-miR-199b-5p | 1 | _......_ | 6 | 75 |
| MIMAT0036710 | oha-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0036700 | oha-miR-133a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0036698 | oha-miR-133a-1-5p | 6 | __...... | 1 | 75 |
| MIMAT0036051 | chi-miR-204-3p | 6 | _......_ | 1 | 75 |
| MIMAT0035947 | chi-miR-133a-5p | 6 | __...... | 1 | 75 |
| MIMAT0035089 | efu-miR-204 | 7 | _......_ | 2 | 75 |
| MIMAT0035063 | efu-miR-138a | 6 | __...... | 1 | 75 |
| MIMAT0035044 | efu-miR-133-5p | 6 | __...... | 1 | 75 |
| MIMAT0035034 | efu-miR-138b | 6 | __...... | 1 | 75 |
| MIMAT0034957 | efu-miR-9296 | 2 | __...... | 7 | 75 |
| MIMAT0034762 | eca-miR-9181 | 8 | _......_ | 3 | 75 |
| MIMAT0034708 | eca-miR-8908g | 2 | ......__ | 7 | 75 |
| MIMAT0034694 | eca-miR-8908k | 2 | ......__ | 7 | 75 |
| MIMAT0034569 | eca-miR-9027 | 7 | __...... | 2 | 75 |
| MIMAT0034548 | eca-miR-9008 | 3 | __...... | 8 | 75 |
| MIMAT0034503 | eca-miR-8968 | 7 | ......__ | 2 | 75 |
| MIMAT0034472 | eca-miR-8943 | 8 | _......_ | 3 | 75 |
| MIMAT0034459 | eca-miR-8931 | 7 | ......__ | 2 | 75 |
| MIMAT0034411 | cfa-miR-8901 | 3 | ......__ | 8 | 75 |
| MIMAT0034398 | cfa-miR-8891 | 2 | ......__ | 7 | 75 |
| MIMAT0034385 | cfa-miR-8883 | 7 | ......__ | 2 | 75 |
| MIMAT0034369 | cfa-miR-8872 | 8 | ......__ | 3 | 75 |
| MIMAT0034363 | cfa-miR-8866 | 2 | __...... | 7 | 75 |
| MIMAT0033816 | pxy-miR-8536a | 3 | _......_ | 8 | 75 |
| MIMAT0033386 | str-miR-7880r-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032950 | ppc-miR-2235c-5p | 3 | ......__ | 8 | 75 |
| MIMAT0032709 | ssa-miR-92a-3-5p | 8 | _......_ | 3 | 75 |
| MIMAT0032491 | ssa-miR-204-4-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032490 | ssa-miR-204-3-3p | 6 | _......_ | 1 | 75 |
| MIMAT0032352 | ssa-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0032341 | ssa-miR-133a-3-5p | 6 | __...... | 1 | 75 |
| MIMAT0032337 | ssa-miR-133a-5p | 6 | __...... | 1 | 75 |
| MIMAT0031585 | bbe-miR-133-3p | 6 | __...... | 1 | 75 |
| MIMAT0030931 | stu-miR8008b | 3 | ......__ | 8 | 75 |
| MIMAT0031189 | stu-miR7999-5p | 6 | ......__ | 1 | 75 |
| MIMAT0031180 | hsa-miR-7977 | 3 | _......_ | 8 | 75 |
| MIMAT0029414 | ipu-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0031113 | mdo-miR-133a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0028759 | mdo-miR-7368-3p | 3 | __...... | 8 | 75 |
| MIMAT0028744 | mdo-miR-1544b-5p | 3 | ......__ | 8 | 75 |
| MIMAT0028685 | mdo-miR-7338-3p | 8 | __...... | 3 | 75 |
| MIMAT0028571 | mdo-miR-7293-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028532 | mdo-miR-7279-5p | 8 | __...... | 3 | 75 |
| MIMAT0028394 | mmu-miR-7213-5p | 7 | ......__ | 2 | 75 |
| MIMAT0028280 | mml-miR-133d-5p | 6 | __...... | 1 | 75 |
| MIMAT0028237 | mml-miR-500b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0028151 | ssc-miR-7138-5p | 2 | _......_ | 7 | 75 |
| MIMAT0028150 | ssc-miR-7137-3p | 6 | __...... | 1 | 75 |
| MIMAT0026218 | ccr-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0026214 | ccr-miR-133a-5p | 6 | __...... | 1 | 75 |
| MIMAT0028077 | mmu-miR-7085-3p | 7 | __...... | 2 | 75 |
| MIMAT0027974 | mmu-miR-7035-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027852 | mmu-miR-6975-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027623 | hsa-miR-6861-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027452 | hsa-miR-6776-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027373 | hsa-miR-6736-5p | 6 | ......__ | 1 | 75 |
| MIMAT0025738 | gga-miR-6641-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025733 | gga-miR-6637-3p | 6 | _......_ | 1 | 75 |
| MIMAT0025719 | gga-miR-6623-3p | 8 | __...... | 3 | 75 |
| MIMAT0025686 | gga-miR-6593-5p | 7 | _......_ | 2 | 75 |
| MIMAT0025680 | gga-miR-6588-3p | 8 | _......_ | 3 | 75 |
| MIMAT0025594 | gga-miR-6545-3p | 6 | __...... | 1 | 75 |
| MIMAT0025363 | ssc-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0025316 | prv-miR-LLT11b | 8 | _......_ | 3 | 75 |
| MIMAT0025315 | prv-miR-LLT11a | 8 | _......_ | 3 | 75 |
| MIMAT0025249 | ptc-miR6446 | 8 | _......_ | 3 | 75 |
| MIMAT0027271 | ppe-miR6258 | 3 | __...... | 8 | 75 |
| MIMAT0024785 | hbr-miR6167 | 2 | ......__ | 7 | 75 |
| MIMAT0024098 | ggo-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0024009 | cgr-miR-92a-5p | 8 | _......_ | 3 | 75 |
| MIMAT0023764 | cgr-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0023252 | hsa-miR-5787 | 8 | _......_ | 3 | 75 |
| MIMAT0023187 | gma-miR5782 | 7 | __...... | 2 | 75 |
| MIMAT0023172 | gma-miR4416c | 6 | ......__ | 1 | 75 |
| MIMAT0022790 | sha-miR-204 | 6 | _......_ | 1 | 75 |
| MIMAT0022771 | sha-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0022559 | ola-miR-133-5p | 6 | __...... | 1 | 75 |
| MIMAT0022554 | ola-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0022293 | hsa-miR-1295b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0021854 | aca-miR-204a-3p | 6 | _......_ | 1 | 75 |
| MIMAT0021757 | aca-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0021540 | asu-miR-5346-5p | 6 | __...... | 1 | 75 |
| MIMAT0021313 | mtr-miR5275 | 6 | __...... | 1 | 75 |
| MIMAT0020216 | dme-miR-4982-3p | 6 | __...... | 1 | 75 |
| MIMAT0020176 | dme-miR-4957-3p | 1 | __...... | 6 | 75 |
| MIMAT0020143 | cel-miR-4937 | 6 | ......__ | 1 | 75 |
| MIMAT0020492 | bfl-miR-4900a | 7 | __...... | 2 | 75 |
| MIMAT0019853 | hsa-miR-4731-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019470 | pma-miR-138b | 6 | __...... | 1 | 75 |
| MIMAT0019469 | pma-miR-138a | 6 | __...... | 1 | 75 |
| MIMAT0019069 | hsa-miR-4530 | 1 | _......_ | 6 | 75 |
| MIMAT0019044 | hsa-miR-4507 | 6 | ......__ | 1 | 75 |
| MIMAT0019041 | hsa-miR-4505 | 8 | _......_ | 3 | 75 |
| MIMAT0019021 | hsa-miR-4487 | 8 | __...... | 3 | 75 |
| MIMAT0019020 | hsa-miR-4486 | 6 | _......_ | 1 | 75 |
| MIMAT0019016 | hsa-miR-4482-5p | 2 | ......__ | 7 | 75 |
| MIMAT0027032 | hsa-miR-500b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0016893 | hsa-miR-4267 | 2 | __...... | 7 | 75 |
| MIMAT0017872 | rno-miR-133c | 7 | __...... | 2 | 75 |
| MIMAT0016240 | ppy-miR-1912 | 2 | ......__ | 7 | 75 |
| MIMAT0016156 | ppy-miR-1207-3p | 8 | __...... | 3 | 75 |
| MIMAT0016053 | ppy-miR-612 | 6 | _......_ | 1 | 75 |
| MIMAT0015760 | ppy-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0017769 | esi-miR3454e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017759 | esi-miR3454b-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017751 | esi-miR3454c-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017747 | esi-miR3454a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0017696 | aly-miR869-3p | 7 | ......__ | 2 | 75 |
| MIMAT0015072 | hsa-miR-320e | 8 | __...... | 3 | 75 |
| MIMAT0014995 | hsa-miR-3130-5p | 2 | ......__ | 7 | 75 |
| MIMAT0014901 | mmu-miR-3090-5p | 8 | ......__ | 3 | 75 |
| MIMAT0014874 | mmu-miR-3083-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014865 | mmu-miR-3078-3p | 8 | _......_ | 3 | 75 |
| MIMAT0027005 | tgu-miR-133-5p | 6 | __...... | 1 | 75 |
| MIMAT0014515 | tgu-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0014354 | cqu-miR-1174 | 6 | ......__ | 1 | 75 |
| MIMAT0013201 | eca-miR-1912 | 2 | ......__ | 7 | 75 |
| MIMAT0012978 | eca-miR-763 | 1 | __...... | 6 | 75 |
| MIMAT0012978 | eca-miR-763 | 8 | __...... | 3 | 75 |
| MIMAT0012925 | eca-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0013716 | bmo-miR-2807a | 3 | __...... | 8 | 75 |
| MIMAT0013554 | cte-miR-2720-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012458 | dsi-miR-1000-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012266 | dps-miR-1000-3p | 8 | _......_ | 3 | 75 |
| MIMAT0012000 | bta-miR-2430 | 7 | ......__ | 2 | 75 |
| MIMAT0011212 | mmu-miR-2136 | 6 | ......__ | 1 | 75 |
| MIMAT0015299 | ssc-miR-133a-5p | 6 | __...... | 1 | 75 |
| MIMAT0010001 | bfl-miR-2073 | 8 | ......__ | 3 | 75 |
| MIMAT0017349 | mmu-miR-1964-5p | 6 | __...... | 1 | 75 |
| MIMAT0009374 | bta-miR-763 | 1 | __...... | 6 | 75 |
| MIMAT0009374 | bta-miR-763 | 8 | __...... | 3 | 75 |
| MIMAT0008274 | ptr-miR-612 | 6 | _......_ | 1 | 75 |
| MIMAT0008034 | ptr-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0007961 | ptr-miR-1207 | 8 | __...... | 3 | 75 |
| MIMAT0007887 | hsa-miR-1912 | 2 | ......__ | 7 | 75 |
| MIMAT0006654 | cfa-miR-138a | 6 | __...... | 1 | 75 |
| MIMAT0006646 | cfa-miR-138b | 6 | __...... | 1 | 75 |
| MIMAT0026889 | mml-miR-501-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026843 | mml-miR-204-3p | 7 | _......_ | 2 | 75 |
| MIMAT0006194 | mml-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0026817 | mml-miR-133c-5p | 6 | __...... | 1 | 75 |
| MIMAT0007534 | gga-miR-1655-5p | 8 | __...... | 3 | 75 |
| MIMAT0007449 | gga-miR-1587 | 8 | _......_ | 3 | 75 |
| MIMAT0007262 | oan-miR-1419e-5p | 8 | _......_ | 3 | 75 |
| MIMAT0007216 | oan-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0006934 | oan-miR-1349 | 6 | _......_ | 1 | 75 |
| MIMAT0006875 | oan-miR-1343-3p | 8 | _......_ | 3 | 75 |
| MIMAT0006864 | oan-miR-133a-5p | 6 | __...... | 1 | 75 |
| MIMAT0005775 | ptr-miR-510 | 2 | ......__ | 7 | 75 |
| MIMAT0005872 | hsa-miR-1207-3p | 8 | __...... | 3 | 75 |
| MIMAT0020900 | dme-miR-1000-3p | 8 | _......_ | 3 | 75 |
| MIMAT0020889 | dme-miR-990-3p | 2 | __...... | 7 | 75 |
| MIMAT0005465 | dme-miR-954-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004250 | ath-miR832-5p | 7 | _......_ | 2 | 75 |
| MIMAT0004111 | mdo-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0026665 | mdo-miR-133a-1-5p | 6 | __...... | 1 | 75 |
| MIMAT0004016 | sme-miR-749 | 6 | _......_ | 1 | 75 |
| MIMAT0003813 | bta-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0003599 | xtr-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0003896 | mmu-miR-763 | 1 | __...... | 6 | 75 |
| MIMAT0003896 | mmu-miR-763 | 8 | __...... | 3 | 75 |
| MIMAT0014815 | mmu-miR-3099-5p | 1 | __...... | 6 | 75 |
| MIMAT0026622 | hsa-miR-619-5p | 6 | _......_ | 1 | 75 |
| MIMAT0003280 | hsa-miR-612 | 6 | _......_ | 1 | 75 |
| MIMAT0003137 | ppt-miR533a-5p | 7 | __...... | 2 | 75 |
| MIMAT0003080 | tni-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0003079 | fru-miR-138 | 6 | __...... | 1 | 75 |
| MIMAT0002185 | kshv-miR-K12-9-3p | 6 | ......__ | 1 | 75 |
| MIMAT0031987 | dre-miR-204-2-3p | 6 | _......_ | 1 | 75 |
| MIMAT0001835 | dre-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0003404 | dre-miR-133a-5p | 6 | __...... | 1 | 75 |
| MIMAT0031970 | dre-miR-133a-2-5p | 6 | __...... | 1 | 75 |
| MIMAT0031924 | dre-miR-204-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026509 | gga-miR-133a-5p | 6 | __...... | 1 | 75 |
| MIMAT0001122 | gga-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0004739 | rno-miR-204-3p | 6 | _......_ | 1 | 75 |
| MIMAT0000844 | rno-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0017124 | rno-miR-133a-5p | 6 | __...... | 1 | 75 |
| MIMAT0000430 | hsa-miR-138-5p | 6 | __...... | 1 | 75 |
| MIMAT0026478 | hsa-miR-133a-5p | 6 | __...... | 1 | 75 |
| MIMAT0022693 | hsa-miR-204-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017002 | mmu-miR-204-3p | 6 | _......_ | 1 | 75 |
| MIMAT0000150 | mmu-miR-138-5p | 6 | __...... | 1 | 75 |
