| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | accccggg | 8 | ||
| MIMAT0027911 | mmu-miR-7003-3p | 1 | _....... | 7 | 87 |
| MIMAT0027911 | mmu-miR-7003-3p | 7 | __...... | 2 | 75 |
| MIMAT0022290 | hsa-miR-5587-3p | 2 | _....... | 8 | 87 |
| MIMAT0022290 | hsa-miR-5587-3p | 8 | __...... | 3 | 75 |
| MIMAT0020498 | bfl-miR-4903 | 2 | ......._ | 8 | 87 |
| MIMAT0019574 | pma-miR-4544-3p | 8 | ......._ | 2 | 87 |
| MIMAT0019071 | hsa-miR-4532 | 1 | _....... | 7 | 87 |
| MIMAT0019071 | hsa-miR-4532 | 8 | _....... | 2 | 87 |
| MIMAT0007196 | oan-miR-1394 | 7 | _....... | 1 | 87 |
| MIMAT0007196 | oan-miR-1394 | 1 | __...... | 6 | 75 |
| MIMAT0022721 | hsa-miR-1247-3p | 1 | _....... | 7 | 87 |
| MIMAT0022721 | hsa-miR-1247-3p | 7 | __...... | 2 | 75 |
| MIMAT0034792 | efu-miR-9205 | 1 | .t...... | 8 | 87 |
| MIMAT0034792 | efu-miR-9205 | 8 | __...... | 3 | 75 |
| MIMAT0013840 | bta-miR-2882 | 1 | .g...... | 8 | 87 |
| MIMAT0013840 | bta-miR-2882 | 8 | __...... | 3 | 75 |
| MIMAT0036027 | chi-miR-193b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0035228 | dme-miR-9382-3p | 3 | _......_ | 8 | 75 |
| MIMAT0035100 | efu-miR-193b | 6 | ......__ | 1 | 75 |
| MIMAT0034728 | eca-miR-9152 | 6 | __...... | 1 | 75 |
| MIMAT0034728 | eca-miR-9152 | 1 | __...... | 6 | 75 |
| MIMAT0034519 | eca-miR-8982 | 8 | __...... | 3 | 75 |
| MIMAT0034519 | eca-miR-8982 | 3 | __...... | 8 | 75 |
| MIMAT0033672 | sma-miR-8475-3p | 7 | __...... | 2 | 75 |
| MIMAT0033672 | sma-miR-8475-3p | 2 | __...... | 7 | 75 |
| MIMAT0030019 | hsa-miR-7704 | 6 | ......__ | 1 | 75 |
| MIMAT0028652 | mdo-miR-193b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0026409 | sbi-miR6221-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028048 | mmu-miR-7071-5p | 6 | __...... | 1 | 75 |
| MIMAT0028048 | mmu-miR-7071-5p | 1 | __...... | 6 | 75 |
| MIMAT0028022 | mmu-miR-7059-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027976 | mmu-miR-7036a-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027582 | hsa-miR-6840-5p | 3 | _......_ | 8 | 75 |
| MIMAT0027468 | hsa-miR-6784-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027427 | hsa-miR-6763-3p | 3 | _......_ | 8 | 75 |
| MIMAT0025310 | prv-miR-LLT7 | 6 | _......_ | 1 | 75 |
| MIMAT0024138 | ggo-miR-193b | 6 | ......__ | 1 | 75 |
| MIMAT0023825 | cgr-miR-193b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0021082 | hsa-miR-5090 | 6 | _......_ | 1 | 75 |
| MIMAT0020115 | bfl-miR-4872b | 8 | _......_ | 3 | 75 |
| MIMAT0019947 | hsa-miR-4783-3p | 1 | _......_ | 6 | 75 |
| MIMAT0019807 | hsa-miR-4707-5p | 2 | _......_ | 7 | 75 |
| MIMAT0019721 | hsa-miR-4655-5p | 8 | _......_ | 3 | 75 |
| MIMAT0019715 | hsa-miR-4651 | 6 | ......__ | 1 | 75 |
| MIMAT0018658 | tca-miR-3817-5p | 7 | ......__ | 2 | 75 |
| MIMAT0016696 | cin-miR-4109-5p | 1 | ......__ | 6 | 75 |
| MIMAT0016595 | cin-miR-4053-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014693 | hsv1-miR-H15 | 3 | _......_ | 8 | 75 |
| MIMAT0027014 | tgu-miR-193a-5p | 6 | ......__ | 1 | 75 |
| MIMAT0014549 | tgu-miR-2992 | 1 | _......_ | 6 | 75 |
| MIMAT0013848 | bta-miR-2890 | 2 | _......_ | 7 | 75 |
| MIMAT0013847 | bta-miR-2889 | 3 | _......_ | 8 | 75 |
| MIMAT0012600 | bmo-miR-2724 | 3 | _......_ | 8 | 75 |
| MIMAT0012598 | hsv1-miR-H8-3p | 3 | _......_ | 8 | 75 |
| MIMAT0011808 | bta-miR-2299-3p | 7 | _......_ | 2 | 75 |
| MIMAT0011803 | bta-miR-2295 | 7 | ......__ | 2 | 75 |
| MIMAT0009166 | osa-miR1846c-3p | 3 | ......__ | 8 | 75 |
| MIMAT0009824 | nve-miR-2050-5p | 6 | __...... | 1 | 75 |
| MIMAT0009824 | nve-miR-2050-5p | 1 | __...... | 6 | 75 |
| MIMAT0015287 | bmo-miR-190-3p | 6 | __...... | 1 | 75 |
| MIMAT0015287 | bmo-miR-190-3p | 1 | __...... | 6 | 75 |
| MIMAT0007791 | osa-miR1846b-3p | 3 | ......__ | 8 | 75 |
| MIMAT0007789 | osa-miR1846a-3p | 3 | ......__ | 8 | 75 |
| MIMAT0006699 | cfa-miR-193b | 6 | ......__ | 1 | 75 |
| MIMAT0026836 | mml-miR-193b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0007334 | gga-miR-1456-3p | 6 | ......__ | 1 | 75 |
| MIMAT0007023 | oan-miR-1362-5p | 2 | ......__ | 7 | 75 |
| MIMAT0006820 | oan-miR-193-5p | 6 | ......__ | 1 | 75 |
| MIMAT0005395 | cre-miR1151b-5p | 7 | _......_ | 2 | 75 |
| MIMAT0005394 | cre-miR1151a-3p | 7 | ......__ | 2 | 75 |
| MIMAT0005393 | cre-miR1151a-5p | 7 | _......_ | 2 | 75 |
| MIMAT0017271 | mmu-miR-193b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004824 | mmu-miR-673-3p | 7 | _......_ | 2 | 75 |
| MIMAT0026629 | gga-miR-193b-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004767 | hsa-miR-193b-5p | 6 | ......__ | 1 | 75 |
