| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | accggtcc | 8 | ||
| MIMAT0019195 | rlcv-miR-rL1-30-5p | 1 | ........ | 8 | 100 |
| MIMAT0019195 | rlcv-miR-rL1-30-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012719 | hvt-miR-H7-3p | 1 | ........ | 8 | 100 |
| MIMAT0012719 | hvt-miR-H7-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032901 | ppc-miR-8228-3p | 2 | ......._ | 8 | 87 |
| MIMAT0032901 | ppc-miR-8228-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019880 | hsa-miR-4746-5p | 1 | _....... | 7 | 87 |
| MIMAT0007277 | oan-miR-1418-3p | 2 | _....... | 8 | 87 |
| MIMAT0035941 | chi-miR-1307-5p | 8 | _......_ | 3 | 75 |
| MIMAT0035119 | efu-miR-582 | 3 | ......__ | 8 | 75 |
| MIMAT0035119 | efu-miR-582 | 8 | ......__ | 3 | 75 |
| MIMAT0034967 | efu-miR-1307 | 8 | _......_ | 3 | 75 |
| MIMAT0033856 | atr-miR8573 | 1 | _......_ | 6 | 75 |
| MIMAT0033621 | sma-miR-8454-3p | 1 | ......__ | 6 | 75 |
| MIMAT0033621 | sma-miR-8454-3p | 6 | ......__ | 1 | 75 |
| MIMAT0032968 | ppc-miR-8251-5p | 2 | ......__ | 7 | 75 |
| MIMAT0032968 | ppc-miR-8251-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030888 | stu-miR7998 | 8 | __...... | 3 | 75 |
| MIMAT0030839 | prd-miR-7968-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030839 | prd-miR-7968-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030300 | bdi-miR7775-5p | 1 | ......__ | 6 | 75 |
| MIMAT0030300 | bdi-miR7775-5p | 6 | ......__ | 1 | 75 |
| MIMAT0030286 | bdi-miR7768b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030284 | bdi-miR7768a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030207 | bdi-miR7735-3p | 1 | _......_ | 6 | 75 |
| MIMAT0028441 | mmu-miR-7236-3p | 8 | __...... | 3 | 75 |
| MIMAT0027813 | mmu-miR-6956-3p | 7 | _......_ | 2 | 75 |
| MIMAT0025380 | ssc-miR-582 | 3 | ......__ | 8 | 75 |
| MIMAT0025380 | ssc-miR-582 | 8 | ......__ | 3 | 75 |
| MIMAT0024792 | hbr-miR6172 | 7 | __...... | 2 | 75 |
| MIMAT0023140 | mtr-miR5756 | 8 | _......_ | 3 | 75 |
| MIMAT0020533 | ath-miR5027 | 1 | ......__ | 6 | 75 |
| MIMAT0020533 | ath-miR5027 | 6 | ......__ | 1 | 75 |
| MIMAT0013845 | bta-miR-2887 | 8 | __...... | 3 | 75 |
| MIMAT0013104 | eca-miR-582-3p | 3 | ......__ | 8 | 75 |
| MIMAT0013104 | eca-miR-582-3p | 8 | ......__ | 3 | 75 |
| MIMAT0012509 | dsi-miR-2577 | 7 | __...... | 2 | 75 |
| MIMAT0011490 | cbr-miR-64b | 7 | __...... | 2 | 75 |
| MIMAT0019102 | tca-miR-12-3p | 1 | __...... | 6 | 75 |
| MIMAT0022727 | hsa-miR-1307-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005421 | cre-miR1165-3p | 8 | __...... | 3 | 75 |
