| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acctagtg | 8 | ||
| MIMAT0003410 | ebv-miR-BART3-5p | 1 | ........ | 8 | 100 |
| MIMAT0034807 | efu-miR-9215b | 8 | _....... | 2 | 87 |
| MIMAT0029959 | osa-miR7694-5p | 2 | ......._ | 8 | 87 |
| MIMAT0028821 | mdo-miR-7382-3p | 7 | _....... | 1 | 87 |
| MIMAT0007830 | osa-miR1862d | 7 | ......._ | 1 | 87 |
| MIMAT0005161 | ppt-miR1047-5p | 7 | ......._ | 1 | 87 |
| MIMAT0003432 | rlcv-miR-rL1-5-5p | 2 | ......._ | 8 | 87 |
| MIMAT0003430 | rlcv-miR-rL1-4-5p | 1 | ......._ | 7 | 87 |
| MIMAT0036110 | chi-miR-28-3p | 8 | .t...... | 1 | 87 |
| MIMAT0023879 | cgr-miR-28-3p | 8 | .t...... | 1 | 87 |
| MIMAT0013093 | eca-miR-28-3p | 8 | .t...... | 1 | 87 |
| MIMAT0006675 | cfa-miR-28 | 8 | .t...... | 1 | 87 |
| MIMAT0026575 | mml-miR-28-3p | 8 | .t...... | 1 | 87 |
| MIMAT0015211 | ssc-miR-28-3p | 8 | .t...... | 1 | 87 |
| MIMAT0004716 | rno-miR-28-3p | 8 | .t...... | 1 | 87 |
| MIMAT0004661 | mmu-miR-28a-3p | 8 | .t...... | 1 | 87 |
| MIMAT0004502 | hsa-miR-28-3p | 8 | .t...... | 1 | 87 |
| MIMAT0036145 | chi-miR-331-5p | 7 | ......__ | 2 | 75 |
| MIMAT0035641 | dvi-miR-9550-3p | 6 | ......__ | 1 | 75 |
| MIMAT0034355 | cfa-miR-8860 | 8 | __...... | 3 | 75 |
| MIMAT0033884 | atr-miR8595 | 2 | _......_ | 7 | 75 |
| MIMAT0033762 | pxy-miR-7a | 3 | __...... | 8 | 75 |
| MIMAT0033495 | str-miR-8400-3p | 8 | ......__ | 3 | 75 |
| MIMAT0033181 | ppc-miR-8320-3p | 7 | __...... | 2 | 75 |
| MIMAT0033157 | ppc-miR-8313-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032538 | ssa-miR-221-3p | 1 | ......__ | 6 | 75 |
| MIMAT0032393 | ssa-miR-155-3p | 2 | ......__ | 7 | 75 |
| MIMAT0031536 | ppe-miR7125-5p | 7 | ......__ | 2 | 75 |
| MIMAT0030860 | stu-miR7987 | 7 | __...... | 2 | 75 |
| MIMAT0031178 | hsa-miR-7975 | 3 | _......_ | 8 | 75 |
| MIMAT0030730 | prd-miR-7936-5p | 8 | _......_ | 3 | 75 |
| MIMAT0030301 | bdi-miR7775-3p | 1 | __...... | 6 | 75 |
| MIMAT0030180 | bdi-miR7725b-5p.1 | 6 | _......_ | 1 | 75 |
| MIMAT0030013 | mtr-miR2592br-5p | 7 | _......_ | 2 | 75 |
| MIMAT0028891 | mdo-miR-7396-3p | 3 | ......__ | 8 | 75 |
| MIMAT0026188 | mdm-miR1511 | 1 | ......__ | 6 | 75 |
| MIMAT0027504 | hsa-miR-6802-5p | 6 | ......__ | 1 | 75 |
| MIMAT0023916 | cgr-miR-331-5p | 6 | ......__ | 1 | 75 |
| MIMAT0023911 | cgr-miR-325-5p | 1 | _......_ | 6 | 75 |
| MIMAT0023705 | hsa-miR-6080 | 2 | __...... | 7 | 75 |
| MIMAT0019803 | hsa-miR-4704-5p | 8 | __...... | 3 | 75 |
| MIMAT0019646 | pma-miR-4612 | 2 | _......_ | 7 | 75 |
| MIMAT0019000 | hsa-miR-4473 | 1 | __...... | 6 | 75 |
| MIMAT0016726 | cin-miR-4131-5p | 1 | ......__ | 6 | 75 |
| MIMAT0017869 | rno-miR-3580-3p | 8 | _......_ | 3 | 75 |
| MIMAT0016131 | ppy-miR-921 | 1 | __...... | 6 | 75 |
| MIMAT0015835 | ppy-miR-331-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015829 | ppy-miR-325 | 1 | _......_ | 6 | 75 |
| MIMAT0016945 | rlcv-miR-rL1-23-5p | 7 | __...... | 2 | 75 |
| MIMAT0013929 | ssc-miR-331-5p | 7 | ......__ | 2 | 75 |
| MIMAT0011748 | osa-miR2118i | 3 | _......_ | 8 | 75 |
| MIMAT0011400 | sme-miR-2e-5p | 3 | ......__ | 8 | 75 |
| MIMAT0010130 | ebv-miR-BART21-5p | 7 | __...... | 2 | 75 |
| MIMAT0009897 | cfa-miR-325 | 1 | _......_ | 6 | 75 |
| MIMAT0007815 | osa-miR1865-5p | 3 | __...... | 8 | 75 |
| MIMAT0006272 | mml-miR-331-5p | 6 | ......__ | 1 | 75 |
| MIMAT0006268 | mml-miR-325 | 1 | _......_ | 6 | 75 |
| MIMAT0007610 | gga-miR-1714 | 1 | _......_ | 6 | 75 |
| MIMAT0006039 | odi-miR-1486 | 6 | ......__ | 1 | 75 |
| MIMAT0007022 | oan-miR-1361-3p | 3 | ......__ | 8 | 75 |
| MIMAT0004971 | hsa-miR-921 | 1 | __...... | 6 | 75 |
| MIMAT0026716 | bta-miR-331-5p | 7 | ......__ | 2 | 75 |
| MIMAT0004205 | bmo-miR-282-5p | 1 | ......__ | 6 | 75 |
| MIMAT0002150 | ssc-miR-325 | 1 | _......_ | 6 | 75 |
| MIMAT0000771 | hsa-miR-325 | 1 | _......_ | 6 | 75 |
| MIMAT0004700 | hsa-miR-331-5p | 6 | ......__ | 1 | 75 |
| MIMAT0004643 | mmu-miR-331-5p | 6 | ......__ | 1 | 75 |
| MIMAT0000558 | mmu-miR-325-5p | 1 | _......_ | 6 | 75 |
| MIMAT0000557 | rno-miR-325-5p | 1 | _......_ | 6 | 75 |
