| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acctgat | 7 | ||
| MIMAT0032934 | ppc-miR-8239-5p | 2 | ....... | 8 | 100 |
| MIMAT0018053 | vvi-miR3640-5p | 1 | ....... | 7 | 100 |
| MIMAT0003412 | ebv-miR-BART4-5p | 2 | ....... | 8 | 100 |
| MIMAT0037258 | ata-miR2118d-3p | 3 | _...... | 8 | 85 |
| MIMAT0037114 | ata-miR2118c-3p | 3 | _...... | 8 | 85 |
| MIMAT0037056 | ssc-miR-9838-5p | 6 | ......_ | 1 | 85 |
| MIMAT0035751 | rno-miR-5132-3p | 1 | _...... | 6 | 85 |
| MIMAT0035532 | bdi-miR2118b | 3 | _...... | 8 | 85 |
| MIMAT0034811 | efu-miR-9219 | 7 | _...... | 2 | 85 |
| MIMAT0032758 | ssa-miR-8163-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030525 | prd-miR-252-3p | 1 | _...... | 6 | 85 |
| MIMAT0029881 | mmu-miR-465d-3p | 8 | _...... | 3 | 85 |
| MIMAT0028719 | mdo-miR-7353-3p | 8 | _...... | 3 | 85 |
| MIMAT0026427 | sbi-miR2118-3p | 3 | _...... | 8 | 85 |
| MIMAT0027725 | mmu-miR-6912-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025775 | gga-miR-6673-3p | 1 | ......_ | 6 | 85 |
| MIMAT0025582 | mmu-miR-6537-3p | 8 | _...... | 3 | 85 |
| MIMAT0024975 | hme-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0024582 | bta-miR-2285g | 3 | ......_ | 8 | 85 |
| MIMAT0024580 | bta-miR-2285e | 3 | ......_ | 8 | 85 |
| MIMAT0024486 | mse-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0024430 | mse-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0024375 | ppy-miR-3934 | 6 | ......_ | 1 | 85 |
| MIMAT0024269 | ggo-miR-3127 | 6 | _...... | 1 | 85 |
| MIMAT0024038 | ptr-miR-3127 | 6 | _...... | 1 | 85 |
| MIMAT0023321 | hco-miR-5887 | 3 | ......_ | 8 | 85 |
| MIMAT0023303 | osa-miR5829 | 6 | _...... | 1 | 85 |
| MIMAT0019926 | hsa-miR-4772-5p | 8 | _...... | 3 | 85 |
| MIMAT0018429 | nlo-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0018386 | ngi-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0018349 | hsa-miR-3934-5p | 6 | ......_ | 1 | 85 |
| MIMAT0018579 | ame-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0018006 | hsa-miR-3622b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018004 | hsa-miR-3622a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015685 | nvi-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0015396 | bmo-miR-3216 | 7 | _...... | 2 | 85 |
| MIMAT0027026 | hsa-miR-3151-3p | 1 | _...... | 6 | 85 |
| MIMAT0019204 | hsa-miR-3140-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015004 | hsa-miR-544b | 1 | ......_ | 6 | 85 |
| MIMAT0014990 | hsa-miR-3127-5p | 6 | _...... | 1 | 85 |
| MIMAT0014776 | api-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0014721 | api-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0014482 | tgu-miR-2972 | 6 | ......_ | 1 | 85 |
| MIMAT0014438 | cqu-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0014364 | cqu-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0014229 | aae-miR-306-5p | 6 | ......_ | 1 | 85 |
| MIMAT0014209 | aae-miR-275-3p | 6 | ......_ | 1 | 85 |
| MIMAT0012693 | isc-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0012651 | dpu-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0012629 | bmo-miR-306a-5p | 6 | ......_ | 1 | 85 |
| MIMAT0013566 | cte-miR-2702-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013331 | mtr-miR2615c | 1 | _...... | 6 | 85 |
| MIMAT0013330 | mtr-miR2615b | 1 | _...... | 6 | 85 |
| MIMAT0013329 | mtr-miR2615a | 1 | _...... | 6 | 85 |
| MIMAT0011950 | bta-miR-2285c | 3 | ......_ | 8 | 85 |
| MIMAT0011852 | bta-miR-2323 | 3 | ......_ | 8 | 85 |
| MIMAT0011815 | bta-miR-2285d | 3 | ......_ | 8 | 85 |
| MIMAT0011766 | zma-miR2118g | 3 | _...... | 8 | 85 |
| MIMAT0011764 | zma-miR2118e | 3 | _...... | 8 | 85 |
| MIMAT0011763 | zma-miR2118d | 3 | _...... | 8 | 85 |
| MIMAT0011760 | zma-miR2118a | 3 | _...... | 8 | 85 |
| MIMAT0011754 | osa-miR2118o | 3 | _...... | 8 | 85 |
| MIMAT0011752 | osa-miR2118m | 3 | _...... | 8 | 85 |
| MIMAT0011750 | osa-miR2118k | 3 | _...... | 8 | 85 |
| MIMAT0011749 | osa-miR2118j | 3 | _...... | 8 | 85 |
| MIMAT0011747 | osa-miR2118h | 3 | _...... | 8 | 85 |
| MIMAT0011745 | osa-miR2118f | 3 | _...... | 8 | 85 |
| MIMAT0011743 | osa-miR2118d | 3 | _...... | 8 | 85 |
| MIMAT0011438 | cel-miR-2211-3p | 6 | ......_ | 1 | 85 |
| MIMAT0009821 | nve-miR-2048-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009808 | nve-miR-2040b-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009798 | nve-miR-2038-5p | 3 | _...... | 8 | 85 |
| MIMAT0019154 | sko-miR-29b-5p | 1 | _...... | 6 | 85 |
| MIMAT0009115 | dya-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0009068 | dya-miR-306-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009045 | dwi-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0008986 | dwi-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0008970 | dvi-miR-275-3p | 6 | ......_ | 1 | 85 |
| MIMAT0008913 | dvi-miR-306-5p | 6 | ......_ | 1 | 85 |
| MIMAT0008880 | dsi-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0008820 | dse-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0008804 | dse-miR-306-5p | 6 | ......_ | 1 | 85 |
| MIMAT0008759 | dpe-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0008744 | dpe-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0008664 | dmo-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0008648 | dmo-miR-306-5p | 6 | ......_ | 1 | 85 |
| MIMAT0008625 | dgr-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0008592 | dgr-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0008503 | der-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0008494 | der-miR-306-5p | 6 | ......_ | 1 | 85 |
| MIMAT0008451 | dan-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0008450 | dan-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0008379 | tca-miR-275-3p | 6 | ......_ | 1 | 85 |
| MIMAT0007432 | gga-miR-1572 | 3 | ......_ | 8 | 85 |
| MIMAT0005966 | osa-miR1432-5p | 6 | _...... | 1 | 85 |
| MIMAT0005530 | aga-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0005011 | pta-miR950b | 6 | ......_ | 1 | 85 |
| MIMAT0005010 | pta-miR950a | 6 | ......_ | 1 | 85 |
| MIMAT0004424 | ame-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0004874 | mmu-miR-465c-3p | 7 | _...... | 2 | 85 |
| MIMAT0004872 | mmu-miR-465b-3p | 7 | _...... | 2 | 85 |
| MIMAT0004311 | ath-miR864-5p | 6 | ......_ | 1 | 85 |
| MIMAT0004201 | bmo-miR-275-3p | 6 | ......_ | 1 | 85 |
| MIMAT0003427 | rlcv-miR-rL1-1-5p | 3 | ......_ | 8 | 85 |
| MIMAT0004217 | mmu-miR-465a-3p | 7 | _...... | 2 | 85 |
| MIMAT0001508 | aga-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0001256 | dps-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0001238 | dps-miR-275 | 6 | ......_ | 1 | 85 |
| MIMAT0000995 | ebv-miR-BHRF1-1 | 3 | ......_ | 8 | 85 |
| MIMAT0000393 | dme-miR-306-5p | 6 | ......_ | 1 | 85 |
| MIMAT0000333 | dme-miR-275-3p | 6 | ......_ | 1 | 85 |
| MIMAT0020325 | cel-miR-87-5p | 3 | _...... | 8 | 85 |
