| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acctggg | 7 | ||
| MIMAT0030426 | hsa-miR-7851-3p | 2 | ....... | 8 | 100 |
| MIMAT0028184 | dev-miR-D12-5p | 2 | ....... | 8 | 100 |
| MIMAT0027386 | hsa-miR-6742-3p | 1 | ....... | 7 | 100 |
| MIMAT0019846 | hsa-miR-4726-3p | 8 | ....... | 2 | 100 |
| MIMAT0014902 | mmu-miR-3090-3p | 8 | ....... | 2 | 100 |
| MIMAT0004961 | ppt-miR900-5p | 8 | ....... | 2 | 100 |
| MIMAT0037023 | ssc-miR-9805-3p | 6 | _...... | 1 | 85 |
| MIMAT0037022 | ssc-miR-9804-5p | 6 | _...... | 1 | 85 |
| MIMAT0036937 | oha-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0036846 | oha-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0036250 | chi-miR-490 | 3 | ......_ | 8 | 85 |
| MIMAT0036146 | chi-miR-331-3p | 3 | _...... | 8 | 85 |
| MIMAT0036068 | chi-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035950 | chi-miR-1343 | 3 | _...... | 8 | 85 |
| MIMAT0035561 | dvi-miR-190-3p | 6 | _...... | 1 | 85 |
| MIMAT0035415 | nve-miR-9454 | 8 | ......_ | 3 | 85 |
| MIMAT0035196 | efu-miR-221 | 1 | ......_ | 6 | 85 |
| MIMAT0034853 | efu-miR-9237a | 6 | _...... | 1 | 85 |
| MIMAT0034507 | eca-miR-8970 | 2 | _...... | 7 | 85 |
| MIMAT0034459 | eca-miR-8931 | 1 | _...... | 6 | 85 |
| MIMAT0034390 | cfa-miR-8886 | 7 | _...... | 2 | 85 |
| MIMAT0034357 | cfa-miR-1343 | 3 | _...... | 8 | 85 |
| MIMAT0033787 | pxy-miR-306 | 6 | ......_ | 1 | 85 |
| MIMAT0033230 | ppc-miR-8342-3p | 3 | _...... | 8 | 85 |
| MIMAT0031853 | cpa-miR8155 | 3 | ......_ | 8 | 85 |
| MIMAT0031522 | ppe-miR1511-3p | 1 | ......_ | 6 | 85 |
| MIMAT0031016 | hsa-miR-8089 | 1 | _...... | 6 | 85 |
| MIMAT0031000 | hsa-miR-8073 | 1 | ......_ | 6 | 85 |
| MIMAT0030891 | stu-miR8001a | 2 | _...... | 7 | 85 |
| MIMAT0030818 | prd-miR-76-5p | 6 | ......_ | 1 | 85 |
| MIMAT0030656 | prd-miR-87-5p | 3 | _...... | 8 | 85 |
| MIMAT0030518 | prd-miR-7880a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0029837 | mmu-miR-7665-3p | 8 | ......_ | 3 | 85 |
| MIMAT0029118 | gga-miR-7482-5p | 1 | _...... | 6 | 85 |
| MIMAT0028527 | mdo-miR-7276-3p | 7 | _...... | 2 | 85 |
| MIMAT0027968 | mmu-miR-7032-5p | 6 | _...... | 1 | 85 |
| MIMAT0027914 | mmu-miR-7005-5p | 1 | _...... | 6 | 85 |
| MIMAT0027882 | mmu-miR-6990-5p | 6 | _...... | 1 | 85 |
| MIMAT0027790 | mmu-miR-6945-5p | 2 | _...... | 7 | 85 |
| MIMAT0027728 | mmu-miR-6914-5p | 2 | _...... | 7 | 85 |
| MIMAT0027708 | mmu-miR-6904-5p | 2 | _...... | 7 | 85 |
| MIMAT0027604 | hsa-miR-6852-5p | 2 | _...... | 7 | 85 |
| MIMAT0027583 | hsa-miR-6840-3p | 7 | _...... | 2 | 85 |
| MIMAT0027482 | hsa-miR-6791-5p | 3 | _...... | 8 | 85 |
| MIMAT0027467 | hsa-miR-6783-3p | 3 | _...... | 8 | 85 |
| MIMAT0027431 | hsa-miR-6765-3p | 3 | ......_ | 8 | 85 |
| MIMAT0027428 | hsa-miR-6764-5p | 7 | _...... | 2 | 85 |
| MIMAT0025448 | pol-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025376 | ssc-miR-490 | 3 | ......_ | 8 | 85 |
| MIMAT0025017 | hme-miR-6310-3p | 6 | ......_ | 1 | 85 |
| MIMAT0024785 | hbr-miR6167 | 8 | _...... | 3 | 85 |
| MIMAT0024388 | ppy-miR-3661 | 3 | ......_ | 8 | 85 |
| MIMAT0024257 | ggo-miR-1343 | 3 | _...... | 8 | 85 |
| MIMAT0024205 | ggo-miR-490 | 3 | ......_ | 8 | 85 |
| MIMAT0023858 | cgr-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0023761 | cgr-miR-1343 | 3 | _...... | 8 | 85 |
| MIMAT0021977 | aca-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0020650 | rgl-miR5139 | 3 | ......_ | 8 | 85 |
| MIMAT0020596 | ssc-miR-1343 | 3 | _...... | 8 | 85 |
| MIMAT0019776 | hsa-miR-1343-3p | 3 | _...... | 8 | 85 |
| MIMAT0019771 | hsa-miR-4685-5p | 6 | _...... | 1 | 85 |
| MIMAT0019479 | pma-miR-146-3p | 3 | _...... | 8 | 85 |
| MIMAT0018119 | hsa-miR-3690 | 1 | ......_ | 6 | 85 |
| MIMAT0018082 | hsa-miR-3661 | 3 | ......_ | 8 | 85 |
| MIMAT0017974 | ssc-miR-484 | 6 | _...... | 1 | 85 |
| MIMAT0022960 | ssc-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0016919 | hsa-miR-4292 | 3 | _...... | 8 | 85 |
| MIMAT0017898 | rno-miR-3594-5p | 6 | _...... | 1 | 85 |
| MIMAT0016243 | ppy-miR-1915 | 7 | _...... | 2 | 85 |
| MIMAT0016070 | ppy-miR-631 | 3 | ......_ | 8 | 85 |
| MIMAT0015910 | ppy-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0015646 | mmu-miR-3474 | 2 | _...... | 7 | 85 |
| MIMAT0017696 | aly-miR869-3p | 1 | _...... | 6 | 85 |
| MIMAT0019216 | hsa-miR-3187-5p | 1 | _...... | 6 | 85 |
| MIMAT0014548 | tgu-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026976 | tgu-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013934 | ssc-miR-361-3p | 8 | _...... | 3 | 85 |
| MIMAT0012945 | eca-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012823 | rno-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012814 | ptr-miR-661 | 3 | _...... | 8 | 85 |
| MIMAT0012812 | ptr-miR-631 | 3 | ......_ | 8 | 85 |
| MIMAT0012450 | dsi-miR-190-3p | 6 | _...... | 1 | 85 |
| MIMAT0012228 | dps-miR-190-3p | 6 | _...... | 1 | 85 |
| MIMAT0011840 | bta-miR-1343-3p | 3 | _...... | 8 | 85 |
| MIMAT0011691 | ppc-miR-2240c | 7 | _...... | 2 | 85 |
| MIMAT0011689 | ppc-miR-2240b | 7 | _...... | 2 | 85 |
| MIMAT0011571 | crm-miR-246-5p | 1 | ......_ | 6 | 85 |
| MIMAT0010001 | bfl-miR-2073 | 2 | _...... | 7 | 85 |
| MIMAT0009875 | cfa-miR-490 | 3 | ......_ | 8 | 85 |
| MIMAT0009357 | bta-miR-631 | 3 | ......_ | 8 | 85 |
| MIMAT0009331 | bta-miR-490 | 3 | ......_ | 8 | 85 |
| MIMAT0019119 | tca-miR-190-3p | 6 | _...... | 1 | 85 |
| MIMAT0008165 | ptr-miR-490 | 3 | ......_ | 8 | 85 |
| MIMAT0007892 | hsa-miR-1915-3p | 7 | _...... | 2 | 85 |
| MIMAT0022949 | ssc-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0006500 | mml-miR-661 | 3 | _...... | 8 | 85 |
| MIMAT0006476 | mml-miR-631 | 3 | ......_ | 8 | 85 |
| MIMAT0006351 | mml-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007508 | gga-miR-1635 | 8 | _...... | 3 | 85 |
| MIMAT0007134 | oan-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0006953 | oan-miR-1356 | 6 | _...... | 1 | 85 |
| MIMAT0006811 | oan-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0005775 | ptr-miR-510 | 8 | _...... | 3 | 85 |
| MIMAT0005407 | cre-miR1157-5p | 1 | ......_ | 6 | 85 |
| MIMAT0005028 | dme-miR-1015-3p | 2 | _...... | 7 | 85 |
| MIMAT0020848 | dme-miR-190-3p | 6 | _...... | 1 | 85 |
| MIMAT0022939 | hsa-miR-939-3p | 2 | _...... | 7 | 85 |
| MIMAT0026701 | mdo-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003780 | mmu-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0019090 | rlcv-miR-rL1-13-5p | 1 | _...... | 6 | 85 |
| MIMAT0003366 | gga-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0003324 | hsa-miR-661 | 3 | _...... | 8 | 85 |
| MIMAT0003300 | hsa-miR-631 | 3 | ......_ | 8 | 85 |
| MIMAT0017199 | rno-miR-361-3p | 8 | _...... | 3 | 85 |
| MIMAT0002806 | hsa-miR-490-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026590 | mml-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0031926 | dre-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017163 | rno-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015120 | cel-miR-358-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017060 | mmu-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004568 | hsa-miR-221-5p | 1 | ......_ | 6 | 85 |
| MIMAT0015092 | cel-lin-4-3p | 3 | ......_ | 8 | 85 |
