| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acgagctt | 8 | ||
| MIMAT0014706 | hsv2-miR-H23-3p | 1 | ........ | 8 | 100 |
| MIMAT0026812 | mml-miR-99b-3p | 8 | ........ | 1 | 100 |
| MIMAT0036967 | oha-miR-99b-3p | 8 | _....... | 2 | 87 |
| MIMAT0036965 | oha-miR-99a-3p | 8 | _....... | 2 | 87 |
| MIMAT0036315 | chi-miR-99b-3p | 8 | _....... | 2 | 87 |
| MIMAT0036313 | chi-miR-99a-3p | 8 | _....... | 2 | 87 |
| MIMAT0035605 | dvi-miR-993-3p | 8 | _....... | 2 | 87 |
| MIMAT0033799 | pxy-miR-6307 | 8 | _....... | 2 | 87 |
| MIMAT0032720 | ssa-miR-99-2-3p | 8 | _....... | 2 | 87 |
| MIMAT0031571 | bbe-miR-100-3p | 8 | _....... | 2 | 87 |
| MIMAT0030617 | prd-miR-993-3p | 8 | _....... | 2 | 87 |
| MIMAT0029740 | cbn-miR-787 | 8 | _....... | 2 | 87 |
| MIMAT0029739 | cbn-miR-231 | 8 | _....... | 2 | 87 |
| MIMAT0025014 | hme-miR-6307-3p | 8 | _....... | 2 | 87 |
| MIMAT0025000 | hme-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0024017 | cgr-miR-99a-3p | 8 | _....... | 2 | 87 |
| MIMAT0023413 | hco-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0022629 | ola-miR-99 | 8 | _....... | 2 | 87 |
| MIMAT0023059 | tur-miR-993a-3p | 8 | _....... | 2 | 87 |
| MIMAT0023053 | tur-miR-993b-3p | 8 | _....... | 2 | 87 |
| MIMAT0021999 | aca-miR-99b-3p | 8 | _....... | 2 | 87 |
| MIMAT0021997 | aca-miR-99a-3p | 8 | _....... | 2 | 87 |
| MIMAT0021532 | asu-miR-993-3p | 8 | _....... | 2 | 87 |
| MIMAT0018441 | nlo-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0018409 | ngi-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0015704 | nvi-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0015467 | bmo-miR-3267b | 8 | ......._ | 2 | 87 |
| MIMAT0014635 | tgu-miR-99-3p | 8 | _....... | 2 | 87 |
| MIMAT0014376 | cqu-miR-993-3p | 8 | _....... | 2 | 87 |
| MIMAT0014135 | api-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0012709 | isc-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0012676 | dpu-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0012462 | dsi-miR-993-3p | 8 | _....... | 2 | 87 |
| MIMAT0012264 | dps-miR-993-3p | 8 | _....... | 2 | 87 |
| MIMAT0011718 | ppc-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0011537 | crm-miR-787 | 8 | _....... | 2 | 87 |
| MIMAT0011530 | crm-miR-231 | 8 | _....... | 2 | 87 |
| MIMAT0011305 | dre-miR-2198 | 7 | ......._ | 1 | 87 |
| MIMAT0010129 | bmo-miR-993a-3p | 8 | _....... | 2 | 87 |
| MIMAT0010128 | bmo-miR-993b-3p | 8 | _....... | 2 | 87 |
| MIMAT0010123 | ame-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0010103 | aga-miR-993 | 8 | _....... | 2 | 87 |
| MIMAT0010094 | tca-miR-993-3p | 8 | _....... | 2 | 87 |
| MIMAT0019145 | bfl-miR-100-3p | 8 | _....... | 2 | 87 |
| MIMAT0007184 | oan-miR-99-3p | 8 | _....... | 2 | 87 |
| MIMAT0005512 | dme-miR-993-3p | 8 | _....... | 2 | 87 |
| MIMAT0004288 | cbr-miR-787 | 8 | _....... | 2 | 87 |
| MIMAT0004222 | cel-miR-787-3p | 8 | _....... | 2 | 87 |
| MIMAT0003831 | bta-miR-423-3p | 7 | _....... | 1 | 87 |
| MIMAT0012533 | bta-miR-99a-3p | 8 | _....... | 2 | 87 |
| MIMAT0026579 | mml-miR-99a-3p | 7 | _....... | 1 | 87 |
| MIMAT0031958 | dre-miR-100-2-3p | 8 | _....... | 2 | 87 |
| MIMAT0001293 | cbr-miR-231 | 8 | _....... | 2 | 87 |
| MIMAT0006781 | gga-miR-99a-3p | 8 | _....... | 2 | 87 |
| MIMAT0004725 | rno-miR-99b-3p | 8 | _....... | 2 | 87 |
| MIMAT0004724 | rno-miR-99a-3p | 8 | _....... | 2 | 87 |
| MIMAT0004678 | hsa-miR-99b-3p | 8 | _....... | 2 | 87 |
| MIMAT0000286 | cel-miR-231-3p | 8 | _....... | 2 | 87 |
| MIMAT0004525 | mmu-miR-99b-3p | 8 | _....... | 2 | 87 |
| MIMAT0016981 | mmu-miR-99a-3p | 8 | _....... | 2 | 87 |
| MIMAT0004511 | hsa-miR-99a-3p | 8 | _....... | 2 | 87 |
| MIMAT0020314 | cel-miR-57-3p | 1 | ......._ | 7 | 87 |
| MIMAT0028548 | mdo-miR-7286-5p | 1 | .g...... | 8 | 87 |
| MIMAT0024347 | mml-miR-3140 | 1 | .a...... | 8 | 87 |
| MIMAT0016837 | cin-miR-4216-5p | 8 | .a...... | 1 | 87 |
| MIMAT0037272 | ame-miR-9868 | 8 | __...... | 3 | 75 |
| MIMAT0037140 | ata-miR390-5p | 6 | __...... | 1 | 75 |
| MIMAT0037037 | ssc-miR-9819-5p | 7 | _......_ | 2 | 75 |
| MIMAT0036867 | oha-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0036525 | tch-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036221 | chi-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0036107 | chi-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0035929 | chi-miR-127-5p | 7 | __...... | 2 | 75 |
| MIMAT0035840 | bra-miR390-5p | 6 | __...... | 1 | 75 |
| MIMAT0035838 | bra-miR319-5p | 2 | __...... | 7 | 75 |
| MIMAT0035688 | bra-miR9564-3p | 1 | _......_ | 6 | 75 |
| MIMAT0035558 | dvi-miR-1017-3p | 8 | __...... | 3 | 75 |
| MIMAT0035555 | dvi-miR-1007-3p | 7 | __...... | 2 | 75 |
| MIMAT0035479 | sly-miR390b-5p | 6 | __...... | 1 | 75 |
| MIMAT0035467 | sly-miR390a-5p | 6 | __...... | 1 | 75 |
| MIMAT0035431 | sly-miR319c-5p | 2 | __...... | 7 | 75 |
| MIMAT0035305 | gsa-miR-993-3p | 8 | __...... | 3 | 75 |
| MIMAT0035195 | efu-miR-9368 | 3 | _......_ | 8 | 75 |
| MIMAT0034542 | eca-miR-9002 | 2 | __...... | 7 | 75 |
| MIMAT0034384 | cfa-miR-8882 | 3 | _......_ | 8 | 75 |
| MIMAT0034138 | gra-miR8733 | 1 | __...... | 6 | 75 |
| MIMAT0033934 | atr-miR390.2 | 6 | __...... | 1 | 75 |
| MIMAT0033933 | atr-miR390.1 | 8 | __...... | 3 | 75 |
| MIMAT0033892 | atr-miR8603 | 2 | __...... | 7 | 75 |
| MIMAT0033875 | atr-miR8588 | 2 | _......_ | 7 | 75 |
| MIMAT0033124 | ppc-miR-8364u-3p | 8 | _......_ | 3 | 75 |
| MIMAT0032803 | cel-miR-8195-5p | 3 | _......_ | 8 | 75 |
| MIMAT0032719 | ssa-miR-99-3p | 7 | __...... | 2 | 75 |
| MIMAT0032580 | ssa-miR-27c-2-5p | 2 | __...... | 7 | 75 |
| MIMAT0032578 | ssa-miR-27c-5p | 2 | __...... | 7 | 75 |
| MIMAT0032576 | ssa-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0031813 | cpa-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0031812 | cpa-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0031473 | ppe-miR390 | 6 | __...... | 1 | 75 |
| MIMAT0031423 | mmu-miR-8117 | 6 | ......__ | 1 | 75 |
| MIMAT0031343 | stu-miR390-5p | 6 | __...... | 1 | 75 |
| MIMAT0031327 | stu-miR477a-3p | 7 | __...... | 2 | 75 |
| MIMAT0031277 | stu-miR319a-5p | 2 | __...... | 7 | 75 |
| MIMAT0030491 | prd-miR-7873a-3p | 7 | __...... | 2 | 75 |
| MIMAT0030330 | bdi-miR7787-5p | 8 | ......__ | 3 | 75 |
| MIMAT0031155 | ama-miR396-3p | 6 | __...... | 1 | 75 |
| MIMAT0029324 | lja-miR390b-5p | 6 | __...... | 1 | 75 |
| MIMAT0029322 | lja-miR390a-5p | 6 | __...... | 1 | 75 |
| MIMAT0028809 | mdo-miR-7376-3p | 7 | _......_ | 2 | 75 |
| MIMAT0028353 | mml-miR-7196-3p | 6 | _......_ | 1 | 75 |
| MIMAT0028161 | ssc-miR-7143-5p | 6 | __...... | 1 | 75 |
| MIMAT0026135 | cme-miR390c | 6 | __...... | 1 | 75 |
| MIMAT0026134 | cme-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0026133 | cme-miR390d | 6 | __...... | 1 | 75 |
| MIMAT0025974 | mdm-miR390f | 6 | __...... | 1 | 75 |
| MIMAT0025973 | mdm-miR390e | 6 | __...... | 1 | 75 |
| MIMAT0025972 | mdm-miR390d | 6 | __...... | 1 | 75 |
| MIMAT0025971 | mdm-miR390c | 6 | __...... | 1 | 75 |
| MIMAT0025970 | mdm-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0025969 | mdm-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0027608 | hsa-miR-6854-5p | 6 | __...... | 1 | 75 |
| MIMAT0027513 | hsa-miR-6806-3p | 8 | __...... | 3 | 75 |
| MIMAT0027493 | hsa-miR-6796-3p | 7 | __...... | 2 | 75 |
| MIMAT0025687 | gga-miR-6593-3p | 1 | _......_ | 6 | 75 |
| MIMAT0025510 | hex-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0025509 | hex-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0025169 | mmu-miR-6415 | 1 | __...... | 6 | 75 |
| MIMAT0024909 | gma-miR390g | 6 | __...... | 1 | 75 |
| MIMAT0024908 | gma-miR390f | 6 | __...... | 1 | 75 |
| MIMAT0024906 | gma-miR390d | 6 | __...... | 1 | 75 |
| MIMAT0024703 | nta-miR390c | 6 | __...... | 1 | 75 |
| MIMAT0024702 | nta-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0024701 | nta-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0027203 | lus-miR390d | 6 | __...... | 1 | 75 |
| MIMAT0027197 | lus-miR390c | 6 | __...... | 1 | 75 |
| MIMAT0027191 | lus-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0027167 | lus-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0024523 | cca-miR390 | 6 | __...... | 1 | 75 |
| MIMAT0024206 | ggo-miR-590 | 1 | __...... | 6 | 75 |
| MIMAT0023957 | cgr-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0023876 | cgr-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0023657 | ame-miR-6037 | 7 | __...... | 2 | 75 |
| MIMAT0023471 | hco-miR-5946c | 2 | __...... | 7 | 75 |
| MIMAT0023179 | gma-miR5775 | 8 | __...... | 3 | 75 |
| MIMAT0022544 | ola-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0023034 | tur-miR-276-5p | 6 | _......_ | 1 | 75 |
| MIMAT0022057 | aca-miR-5436-5p | 6 | _......_ | 1 | 75 |
| MIMAT0021907 | aca-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0021523 | asu-miR-67-5p | 6 | _......_ | 1 | 75 |
| MIMAT0022750 | cme-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0020660 | bdi-miR390a-5p | 6 | __...... | 1 | 75 |
| MIMAT0020021 | sko-miR-4820 | 2 | __...... | 7 | 75 |
| MIMAT0019992 | cel-miR-4808-3p | 6 | __...... | 1 | 75 |
| MIMAT0020420 | tcc-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0020419 | tcc-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0019643 | pma-miR-4609 | 7 | _......_ | 2 | 75 |
| MIMAT0019438 | pma-miR-100a-3p | 8 | __...... | 3 | 75 |
| MIMAT0019081 | hsa-miR-4538 | 1 | __...... | 6 | 75 |
| MIMAT0018975 | hsa-miR-4453 | 1 | __...... | 6 | 75 |
| MIMAT0027037 | hsa-miR-3928-5p | 8 | __...... | 3 | 75 |
| MIMAT0018864 | tca-miR-980-5p | 8 | ......__ | 3 | 75 |
| MIMAT0018604 | ame-miR-3735 | 1 | ......__ | 6 | 75 |
| MIMAT0018128 | pab-miR3696 | 1 | _......_ | 6 | 75 |
| MIMAT0018052 | vvi-miR3639-3p | 1 | __...... | 6 | 75 |
| MIMAT0016684 | cin-miR-4100-5p | 2 | __...... | 7 | 75 |
| MIMAT0016032 | ppy-miR-590-5p | 1 | __...... | 6 | 75 |
| MIMAT0015883 | ppy-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0017762 | esi-miR3460-3p | 3 | ......__ | 8 | 75 |
| MIMAT0017741 | ath-miR841b-5p | 2 | ......__ | 7 | 75 |
| MIMAT0017535 | aly-miR390b-5p | 6 | __...... | 1 | 75 |
| MIMAT0017533 | aly-miR390a-5p | 6 | __...... | 1 | 75 |
| MIMAT0017431 | aly-miR319b-5p | 2 | __...... | 7 | 75 |
| MIMAT0017429 | aly-miR319a-5p | 2 | __...... | 7 | 75 |
| MIMAT0026991 | tgu-miR-27-5p | 2 | __...... | 7 | 75 |
| MIMAT0014185 | rco-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0014184 | rco-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0014092 | csi-miR390 | 6 | __...... | 1 | 75 |
| MIMAT0014033 | zma-miR390b-5p | 6 | __...... | 1 | 75 |
| MIMAT0013998 | zma-miR390a-5p | 6 | __...... | 1 | 75 |
| MIMAT0013889 | ssc-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0013881 | ssc-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0013058 | eca-miR-590-5p | 1 | __...... | 6 | 75 |
| MIMAT0013040 | eca-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0013567 | cte-miR-2703-5p | 2 | __...... | 7 | 75 |
| MIMAT0013560 | cte-miR-2698 | 2 | __...... | 7 | 75 |
| MIMAT0013529 | cte-miR-993 | 7 | __...... | 2 | 75 |
| MIMAT0012339 | dps-miR-2541-3p | 8 | __...... | 3 | 75 |
| MIMAT0011958 | bta-miR-2401 | 2 | __...... | 7 | 75 |
| MIMAT0011568 | crm-miR-72-3p | 6 | _......_ | 1 | 75 |
| MIMAT0011481 | cbr-miR-1822 | 1 | _......_ | 6 | 75 |
| MIMAT0011347 | sbi-miR390 | 6 | __...... | 1 | 75 |
| MIMAT0012161 | sme-miR-2169-3p | 8 | __...... | 3 | 75 |
| MIMAT0032055 | dvi-miR-9b-3p | 3 | __...... | 8 | 75 |
| MIMAT0008142 | ptr-miR-423 | 6 | _......_ | 1 | 75 |
| MIMAT0007880 | mmu-miR-1901 | 8 | ......__ | 3 | 75 |
| MIMAT0006450 | mml-miR-590-5p | 1 | __...... | 6 | 75 |
| MIMAT0006322 | mml-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026844 | mml-miR-208a-5p | 1 | __...... | 6 | 75 |
| MIMAT0026802 | mml-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0007361 | gma-miR390b-5p | 6 | __...... | 1 | 75 |
| MIMAT0007359 | gma-miR390a-5p | 6 | __...... | 1 | 75 |
| MIMAT0006069 | csa-miR-1473 | 8 | __...... | 3 | 75 |
| MIMAT0006067 | cin-miR-1473-3p | 8 | __...... | 3 | 75 |
| MIMAT0006024 | odi-miR-1473 | 8 | __...... | 3 | 75 |
| MIMAT0007096 | oan-miR-590-5p | 1 | __...... | 6 | 75 |
| MIMAT0006956 | oan-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0005707 | vvi-miR390 | 6 | __...... | 1 | 75 |
| MIMAT0005604 | bna-miR390c | 6 | __...... | 1 | 75 |
| MIMAT0005603 | bna-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0005602 | bna-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0005557 | mcmv-miR-m108-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017307 | rno-miR-434-5p | 6 | _......_ | 1 | 75 |
| MIMAT0005313 | rno-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0005030 | dme-miR-1017-3p | 8 | __...... | 3 | 75 |
| MIMAT0005020 | dme-miR-1007-3p | 7 | __...... | 2 | 75 |
| MIMAT0005817 | ghr-miR390c | 6 | __...... | 1 | 75 |
| MIMAT0005816 | ghr-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0005815 | ghr-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0026727 | mtr-miR319b-5p | 1 | __...... | 6 | 75 |
| MIMAT0011072 | mtr-miR390 | 6 | __...... | 1 | 75 |
| MIMAT0004895 | mmu-miR-590-5p | 1 | __...... | 6 | 75 |
| MIMAT0004263 | ath-miR841a-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026714 | mdo-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0004020 | sme-miR-753a | 1 | __...... | 6 | 75 |
| MIMAT0003454 | mmu-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003258 | hsa-miR-590-5p | 1 | __...... | 6 | 75 |
| MIMAT0004325 | ppt-miR319d-5p.1 | 1 | __...... | 6 | 75 |
| MIMAT0003132 | ppt-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0003131 | ppt-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0026570 | mml-miR-127-5p | 8 | __...... | 3 | 75 |
| MIMAT0002014 | ptc-miR390d-5p | 6 | __...... | 1 | 75 |
| MIMAT0002013 | ptc-miR390c | 6 | __...... | 1 | 75 |
| MIMAT0002012 | ptc-miR390b | 6 | __...... | 1 | 75 |
| MIMAT0002011 | ptc-miR390a | 6 | __...... | 1 | 75 |
| MIMAT0031950 | dre-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0026556 | mtr-miR319a-5p | 2 | __...... | 7 | 75 |
| MIMAT0001588 | osa-miR390-5p | 6 | __...... | 1 | 75 |
| MIMAT0001340 | hsa-miR-423-3p | 6 | _......_ | 1 | 75 |
| MIMAT0026547 | gga-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0000932 | ath-miR390b-5p | 6 | __...... | 1 | 75 |
| MIMAT0000931 | ath-miR390a-5p | 6 | __...... | 1 | 75 |
| MIMAT0017155 | rno-miR-208a-5p | 1 | __...... | 6 | 75 |
| MIMAT0017101 | rno-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0017014 | mmu-miR-208a-5p | 1 | __...... | 6 | 75 |
| MIMAT0004588 | hsa-miR-27b-5p | 2 | __...... | 7 | 75 |
| MIMAT0020829 | dme-miR-9b-3p | 3 | __...... | 8 | 75 |
| MIMAT0026474 | hsa-miR-208a-5p | 1 | __...... | 6 | 75 |
| MIMAT0004522 | mmu-miR-27b-5p | 2 | __...... | 7 | 75 |
