| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acggtgc | 7 | ||
| MIMAT0034614 | eca-miR-9069 | 2 | ....... | 8 | 100 |
| MIMAT0031647 | bbe-miR-216-3p | 2 | ....... | 8 | 100 |
| MIMAT0024334 | mml-miR-1250 | 1 | ....... | 7 | 100 |
| MIMAT0024235 | ggo-miR-1250 | 1 | ....... | 7 | 100 |
| MIMAT0016175 | ppy-miR-1250 | 1 | ....... | 7 | 100 |
| MIMAT0019150 | bfl-miR-216-3p | 2 | ....... | 8 | 100 |
| MIMAT0007976 | ptr-miR-1250 | 1 | ....... | 7 | 100 |
| MIMAT0005902 | hsa-miR-1250-5p | 1 | ....... | 7 | 100 |
| MIMAT0003442 | rlcv-miR-rL1-12-3p | 2 | ....... | 8 | 100 |
| MIMAT0035029 | efu-miR-411 | 1 | ......_ | 6 | 85 |
| MIMAT0034747 | eca-miR-9169 | 3 | ......_ | 8 | 85 |
| MIMAT0033774 | pxy-miR-8531 | 1 | _...... | 6 | 85 |
| MIMAT0032779 | ath-miR8180 | 3 | _...... | 8 | 85 |
| MIMAT0029861 | mmu-miR-7676-3p | 3 | _...... | 8 | 85 |
| MIMAT0029843 | mmu-miR-7668-3p | 1 | _...... | 6 | 85 |
| MIMAT0029096 | gga-miR-7471-5p | 3 | _...... | 8 | 85 |
| MIMAT0027819 | mmu-miR-6959-3p | 8 | _...... | 3 | 85 |
| MIMAT0025609 | gga-miR-6551-5p | 1 | _...... | 6 | 85 |
| MIMAT0025296 | mja-miR-6489-5p | 7 | _...... | 2 | 85 |
| MIMAT0021545 | asu-miR-5347-3p | 3 | ......_ | 8 | 85 |
| MIMAT0021068 | gma-miR169i-3p | 2 | _...... | 7 | 85 |
| MIMAT0019881 | hsa-miR-4746-3p | 3 | _...... | 8 | 85 |
| MIMAT0018827 | tca-miR-3867-3p | 8 | ......_ | 3 | 85 |
| MIMAT0018690 | tca-miR-3830-5p | 3 | _...... | 8 | 85 |
| MIMAT0018538 | ame-miR-3720 | 3 | ......_ | 8 | 85 |
| MIMAT0017369 | rno-miR-667-5p | 1 | _...... | 6 | 85 |
| MIMAT0011289 | dre-miR-2185-5p | 1 | _...... | 6 | 85 |
| MIMAT0007634 | gga-miR-1732 | 6 | ......_ | 1 | 85 |
| MIMAT0017239 | mmu-miR-667-5p | 1 | _...... | 6 | 85 |
| MIMAT0003435 | rlcv-miR-rL1-6-3p | 8 | _...... | 3 | 85 |
| MIMAT0003390 | ebv-miR-BART1-3p | 8 | _...... | 3 | 85 |
