| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acgttcc | 7 | ||
| MIMAT0037248 | ata-miR166c-5p | 7 | ....... | 1 | 100 |
| MIMAT0013969 | bhv1-miR-B7 | 2 | ....... | 8 | 100 |
| MIMAT0035774 | tae-miR1137b-5p | 3 | _...... | 8 | 85 |
| MIMAT0035722 | rno-miR-1247-3p | 8 | _...... | 3 | 85 |
| MIMAT0034148 | gra-miR8736 | 8 | _...... | 3 | 85 |
| MIMAT0033711 | pxy-miR-8499c | 2 | _...... | 7 | 85 |
| MIMAT0033670 | sma-miR-8474-3p | 6 | ......_ | 1 | 85 |
| MIMAT0030202 | bdi-miR7734-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028359 | mml-miR-1247-3p | 8 | _...... | 3 | 85 |
| MIMAT0028021 | mmu-miR-7058-3p | 3 | _...... | 8 | 85 |
| MIMAT0025550 | bta-miR-1247-3p | 8 | _...... | 3 | 85 |
| MIMAT0023673 | ame-miR-6049 | 7 | _...... | 2 | 85 |
| MIMAT0023664 | ame-miR-6042 | 8 | _...... | 3 | 85 |
| MIMAT0018263 | gma-miR1520j | 8 | ......_ | 3 | 85 |
| MIMAT0016795 | cin-miR-4181-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016527 | cin-miR-4019-3p | 3 | _...... | 8 | 85 |
| MIMAT0014792 | api-miR-3051 | 8 | _...... | 3 | 85 |
| MIMAT0009137 | osa-miR1320-5p | 7 | _...... | 2 | 85 |
| MIMAT0008011 | ptr-miR-1292 | 8 | _...... | 3 | 85 |
| MIMAT0005943 | hsa-miR-1292-5p | 8 | _...... | 3 | 85 |
| MIMAT0014801 | mmu-miR-1247-3p | 8 | _...... | 3 | 85 |
| MIMAT0020789 | dme-miR-6-3-5p | 8 | _...... | 3 | 85 |
