| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | actccctc | 8 | ||
| MIMAT0015216 | kshv-miR-K12-8-5p | 1 | ........ | 8 | 100 |
| MIMAT0034062 | gra-miR7494b | 8 | _....... | 2 | 87 |
| MIMAT0031710 | bbe-miR-4899-5p | 2 | ......._ | 8 | 87 |
| MIMAT0032243 | rgl-miR7802 | 7 | ......._ | 1 | 87 |
| MIMAT0032239 | rgl-miR7798 | 7 | ......._ | 1 | 87 |
| MIMAT0030067 | bdi-miR5174e-5p.2 | 2 | ......._ | 8 | 87 |
| MIMAT0028438 | mmu-miR-7235-5p | 8 | _....... | 2 | 87 |
| MIMAT0027998 | mmu-miR-7047-5p | 8 | _....... | 2 | 87 |
| MIMAT0027830 | mmu-miR-6965-5p | 8 | _....... | 2 | 87 |
| MIMAT0024626 | mml-miR-6133 | 8 | _....... | 2 | 87 |
| MIMAT0024623 | mml-miR-6130 | 8 | _....... | 2 | 87 |
| MIMAT0024622 | mml-miR-6129 | 8 | _....... | 2 | 87 |
| MIMAT0024619 | mml-miR-6127 | 8 | _....... | 2 | 87 |
| MIMAT0024617 | hsa-miR-6133 | 8 | _....... | 2 | 87 |
| MIMAT0024614 | hsa-miR-6130 | 8 | _....... | 2 | 87 |
| MIMAT0024613 | hsa-miR-6129 | 8 | _....... | 2 | 87 |
| MIMAT0024610 | hsa-miR-6127 | 8 | _....... | 2 | 87 |
| MIMAT0024607 | ptr-miR-6133 | 8 | _....... | 2 | 87 |
| MIMAT0024604 | ptr-miR-6130 | 8 | _....... | 2 | 87 |
| MIMAT0024603 | ptr-miR-6129 | 8 | _....... | 2 | 87 |
| MIMAT0024600 | ptr-miR-6127 | 8 | _....... | 2 | 87 |
| MIMAT0024571 | bta-miR-149-3p | 7 | _....... | 1 | 87 |
| MIMAT0024109 | ggo-miR-4510 | 8 | _....... | 2 | 87 |
| MIMAT0024027 | ptr-miR-4510 | 8 | _....... | 2 | 87 |
| MIMAT0023781 | cgr-miR-149-3p | 7 | _....... | 1 | 87 |
| MIMAT0023508 | hco-miR-265 | 8 | _....... | 2 | 87 |
| MIMAT0023435 | hco-miR-5940 | 8 | _....... | 2 | 87 |
| MIMAT0020712 | bdi-miR319a | 8 | _....... | 2 | 87 |
| MIMAT0020491 | bfl-miR-4899 | 2 | ......._ | 8 | 87 |
| MIMAT0019047 | hsa-miR-4510 | 8 | _....... | 2 | 87 |
| MIMAT0018996 | hsa-miR-4469 | 2 | _....... | 8 | 87 |
| MIMAT0018931 | hsa-miR-4419a | 8 | _....... | 2 | 87 |
| MIMAT0016168 | ppy-miR-1238 | 1 | _....... | 7 | 87 |
| MIMAT0014937 | mmu-miR-3103-5p | 8 | _....... | 2 | 87 |
| MIMAT0026827 | mml-miR-149-3p | 7 | _....... | 1 | 87 |
| MIMAT0007465 | gga-miR-1599 | 8 | _....... | 2 | 87 |
| MIMAT0005053 | ppt-miR477h | 2 | _....... | 8 | 87 |
| MIMAT0000591 | rno-miR-343 | 2 | _....... | 8 | 87 |
| MIMAT0000321 | cel-miR-265 | 8 | _....... | 2 | 87 |
| MIMAT0016990 | mmu-miR-149-3p | 7 | _....... | 1 | 87 |
| MIMAT0035595 | dvi-miR-980-5p | 1 | .g...... | 8 | 87 |
| MIMAT0031067 | oan-miR-365-2-5p | 8 | .g...... | 1 | 87 |
| MIMAT0031088 | tgu-miR-365-2-5p | 8 | .g...... | 1 | 87 |
| MIMAT0017376 | ssc-miR-365-5p | 8 | .g...... | 1 | 87 |
| MIMAT0007817 | osa-miR1866-5p | 8 | .a...... | 1 | 87 |
| MIMAT0031081 | mml-miR-365-2-5p | 8 | .g...... | 1 | 87 |
| MIMAT0026856 | mml-miR-365-1-5p | 8 | .g...... | 1 | 87 |
| MIMAT0026683 | mdo-miR-365-5p | 8 | .g...... | 1 | 87 |
| MIMAT0031075 | gga-miR-365-2-5p | 8 | .g...... | 1 | 87 |
| MIMAT0026630 | gga-miR-365-1-5p | 8 | .g...... | 1 | 87 |
| MIMAT0017184 | rno-miR-365-5p | 8 | .g...... | 1 | 87 |
| MIMAT0037053 | ssc-miR-9835-3p | 8 | __...... | 3 | 75 |
| MIMAT0035330 | gsa-miR-9393-5p | 8 | __...... | 3 | 75 |
| MIMAT0034825 | efu-miR-9242 | 1 | __...... | 6 | 75 |
| MIMAT0034362 | cfa-miR-8865 | 2 | _......_ | 7 | 75 |
| MIMAT0034154 | gra-miR8771c | 7 | _......_ | 2 | 75 |
| MIMAT0033750 | pxy-miR-929 | 1 | _......_ | 6 | 75 |
| MIMAT0033546 | sma-miR-8421-5p | 1 | _......_ | 6 | 75 |
| MIMAT0032603 | ssa-miR-30a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0031685 | bbe-miR-4864-5p | 6 | _......_ | 1 | 75 |
| MIMAT0031493 | ppe-miR395o | 3 | __...... | 8 | 75 |
| MIMAT0031479 | ppe-miR395b-5p | 3 | __...... | 8 | 75 |
| MIMAT0031477 | ppe-miR395a-5p | 3 | __...... | 8 | 75 |
| MIMAT0030450 | bta-miR-7865 | 7 | _......_ | 2 | 75 |
| MIMAT0030105 | bdi-miR5174d-5p | 1 | __...... | 6 | 75 |
| MIMAT0030103 | bdi-miR5174c-5p | 1 | __...... | 6 | 75 |
| MIMAT0029296 | mes-miR477g | 3 | _......_ | 8 | 75 |
| MIMAT0029295 | mes-miR477f | 3 | _......_ | 8 | 75 |
| MIMAT0029294 | mes-miR477e | 3 | _......_ | 8 | 75 |
| MIMAT0029293 | mes-miR477d | 3 | _......_ | 8 | 75 |
| MIMAT0029292 | mes-miR477c | 3 | _......_ | 8 | 75 |
| MIMAT0029291 | mes-miR477b | 3 | _......_ | 8 | 75 |
| MIMAT0029290 | mes-miR477a | 3 | _......_ | 8 | 75 |
| MIMAT0029067 | gga-miR-7456-3p | 7 | _......_ | 2 | 75 |
| MIMAT0029065 | gga-miR-7455-3p | 3 | __...... | 8 | 75 |
| MIMAT0029022 | oan-miR-7422b-5p | 8 | ......__ | 3 | 75 |
| MIMAT0029011 | oan-miR-7430-3p | 8 | _......_ | 3 | 75 |
| MIMAT0028748 | mdo-miR-7366-5p | 7 | __...... | 2 | 75 |
| MIMAT0028471 | mdo-miR-7252-3p | 2 | _......_ | 7 | 75 |
| MIMAT0026102 | cme-miR477b | 3 | _......_ | 8 | 75 |
| MIMAT0026089 | cme-miR477a | 3 | _......_ | 8 | 75 |
| MIMAT0028124 | hsa-miR-7113-3p | 2 | _......_ | 7 | 75 |
| MIMAT0028110 | hsa-miR-7106-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027986 | mmu-miR-7041-5p | 7 | __...... | 2 | 75 |
| MIMAT0027982 | mmu-miR-7039-5p | 7 | __...... | 2 | 75 |
| MIMAT0027936 | mmu-miR-7016-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027892 | mmu-miR-6995-5p | 8 | ......__ | 3 | 75 |
| MIMAT0027855 | mmu-miR-6976-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027836 | mmu-miR-6967-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027758 | mmu-miR-6929-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027747 | mmu-miR-6923-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027685 | hsa-miR-6892-3p | 1 | __...... | 6 | 75 |
| MIMAT0027666 | hsa-miR-6883-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027656 | hsa-miR-6878-5p | 6 | _......_ | 1 | 75 |
| MIMAT0027650 | hsa-miR-6875-5p | 7 | __...... | 2 | 75 |
| MIMAT0027646 | hsa-miR-6873-5p | 8 | __...... | 3 | 75 |
| MIMAT0027635 | hsa-miR-6867-3p | 3 | _......_ | 8 | 75 |
| MIMAT0027568 | hsa-miR-6834-5p | 8 | __...... | 3 | 75 |
| MIMAT0027507 | hsa-miR-6803-3p | 1 | __...... | 6 | 75 |
| MIMAT0027494 | hsa-miR-6797-5p | 8 | __...... | 3 | 75 |
| MIMAT0027420 | hsa-miR-6760-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027408 | hsa-miR-6754-5p | 8 | _......_ | 3 | 75 |
| MIMAT0025836 | gga-miR-6599-5p | 7 | _......_ | 2 | 75 |
| MIMAT0025562 | bta-miR-6528 | 7 | __...... | 2 | 75 |
| MIMAT0025275 | ptc-miR477d-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031171 | ppe-miR477b-5p | 1 | __...... | 6 | 75 |
| MIMAT0031170 | ppe-miR477a-5p | 1 | __...... | 6 | 75 |
| MIMAT0024498 | mse-miR-929a | 1 | _......_ | 6 | 75 |
| MIMAT0024261 | ggo-miR-3126 | 7 | __...... | 2 | 75 |
| MIMAT0023691 | ame-miR-6066 | 6 | _......_ | 1 | 75 |
| MIMAT0023683 | ame-miR-6059 | 8 | __...... | 3 | 75 |
| MIMAT0023680 | ame-miR-6056 | 6 | __...... | 1 | 75 |
| MIMAT0023454 | hco-miR-5952 | 7 | __...... | 2 | 75 |
| MIMAT0023166 | gma-miR5769 | 7 | __...... | 2 | 75 |
| MIMAT0022584 | ola-miR-150 | 1 | ......__ | 6 | 75 |
| MIMAT0022077 | aca-miR-5408c-5p | 2 | ......__ | 7 | 75 |
| MIMAT0022019 | aca-miR-5405-3p | 8 | _......_ | 3 | 75 |
| MIMAT0021342 | mtr-miR5284h | 6 | __...... | 1 | 75 |
| MIMAT0021341 | mtr-miR5284g | 6 | __...... | 1 | 75 |
| MIMAT0021340 | mtr-miR5284f | 6 | __...... | 1 | 75 |
| MIMAT0021339 | mtr-miR5284e | 6 | __...... | 1 | 75 |
| MIMAT0021338 | mtr-miR5284d | 6 | __...... | 1 | 75 |
| MIMAT0021337 | mtr-miR5284c | 6 | __...... | 1 | 75 |
| MIMAT0021336 | mtr-miR5284b | 6 | __...... | 1 | 75 |
| MIMAT0021335 | mtr-miR5284a | 6 | __...... | 1 | 75 |
| MIMAT0027066 | bdi-miR159a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020183 | dme-miR-4962-5p | 3 | __...... | 8 | 75 |
| MIMAT0020097 | bfl-miR-4864-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019899 | hsa-miR-4756-5p | 7 | _......_ | 2 | 75 |
| MIMAT0019868 | hsa-miR-4739 | 7 | _......_ | 2 | 75 |
| MIMAT0019772 | hsa-miR-4685-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019744 | hsa-miR-4667-3p | 1 | __...... | 6 | 75 |
| MIMAT0019526 | pma-miR-216a-3p | 8 | ......__ | 3 | 75 |
| MIMAT0019489 | pma-miR-181b-3p | 8 | _......_ | 3 | 75 |
| MIMAT0018959 | hsa-miR-4441 | 8 | _......_ | 3 | 75 |
| MIMAT0018477 | csi-miR477c | 1 | __...... | 6 | 75 |
| MIMAT0018476 | csi-miR477b | 3 | _......_ | 8 | 75 |
| MIMAT0018475 | csi-miR477a | 3 | _......_ | 8 | 75 |
| MIMAT0016917 | hsa-miR-4287 | 2 | _......_ | 7 | 75 |
| MIMAT0016900 | hsa-miR-4270 | 8 | _......_ | 3 | 75 |
| MIMAT0016849 | hsa-miR-4294 | 6 | ......__ | 1 | 75 |
| MIMAT0017795 | rno-miR-3541 | 1 | __...... | 6 | 75 |
| MIMAT0016347 | ahy-miR3520-3p | 7 | _......_ | 2 | 75 |
| MIMAT0016130 | ppy-miR-920 | 6 | _......_ | 1 | 75 |
| MIMAT0015036 | hsa-miR-3162-5p | 8 | _......_ | 3 | 75 |
| MIMAT0014989 | hsa-miR-3126-5p | 7 | __...... | 2 | 75 |
| MIMAT0014826 | mmu-miR-3060-5p | 6 | ......__ | 1 | 75 |
| MIMAT0012587 | aqc-miR477c | 3 | _......_ | 8 | 75 |
| MIMAT0012586 | aqc-miR477b | 3 | _......_ | 8 | 75 |
| MIMAT0012585 | aqc-miR477a | 3 | _......_ | 8 | 75 |
| MIMAT0012584 | aqc-miR477e | 3 | _......_ | 8 | 75 |
| MIMAT0012582 | aqc-miR477g | 3 | _......_ | 8 | 75 |
| MIMAT0012460 | dsi-miR-929-3p | 1 | _......_ | 6 | 75 |
| MIMAT0012268 | dps-miR-929-3p | 1 | _......_ | 6 | 75 |
| MIMAT0011978 | bta-miR-2415-5p | 6 | ......__ | 1 | 75 |
| MIMAT0011930 | bta-miR-2382-5p | 8 | ......__ | 3 | 75 |
| MIMAT0010101 | aga-miR-929 | 1 | _......_ | 6 | 75 |
| MIMAT0010071 | osa-miR2103 | 3 | __...... | 8 | 75 |
| MIMAT0009594 | lgi-miR-281-5p | 7 | _......_ | 2 | 75 |
| MIMAT0015289 | bmo-miR-929-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009439 | mmu-miR-1966-5p | 7 | _......_ | 2 | 75 |
| MIMAT0009408 | mmu-miR-1943-5p | 7 | _......_ | 2 | 75 |
| MIMAT0009405 | mmu-miR-1941-5p | 6 | _......_ | 1 | 75 |
| MIMAT0019133 | tca-miR-929-3p | 1 | _......_ | 6 | 75 |
| MIMAT0008296 | ptr-miR-642 | 2 | __...... | 7 | 75 |
| MIMAT0006575 | vvi-miR477a | 3 | _......_ | 8 | 75 |
| MIMAT0006483 | mml-miR-642 | 2 | __...... | 7 | 75 |
| MIMAT0026894 | mml-miR-518c-5p | 8 | __...... | 3 | 75 |
| MIMAT0007689 | gga-miR-1778 | 6 | __...... | 1 | 75 |
| MIMAT0007525 | gga-miR-1648-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007481 | gga-miR-1614-3p | 7 | _......_ | 2 | 75 |
| MIMAT0006015 | pta-miR482d | 3 | _......_ | 8 | 75 |
| MIMAT0026761 | oan-miR-1413-5p | 6 | __...... | 1 | 75 |
| MIMAT0007182 | oan-miR-802-3p | 6 | _......_ | 1 | 75 |
| MIMAT0007120 | oan-miR-1381-5p | 1 | __...... | 6 | 75 |
| MIMAT0007065 | oan-miR-1375-3p | 6 | _......_ | 1 | 75 |
| MIMAT0006839 | oan-miR-1338-5p | 7 | _......_ | 2 | 75 |
| MIMAT0005952 | hsa-miR-1321 | 7 | _......_ | 2 | 75 |
| MIMAT0032029 | hsa-miR-1249-5p | 8 | __...... | 3 | 75 |
| MIMAT0005392 | cre-miR1150.1 | 7 | __...... | 2 | 75 |
| MIMAT0005375 | ppt-miR477b | 3 | _......_ | 8 | 75 |
| MIMAT0004480 | hiv1-miR-H1 | 8 | _......_ | 3 | 75 |
| MIMAT0005181 | ppt-miR1062 | 1 | __...... | 6 | 75 |
| MIMAT0005052 | ppt-miR477e | 3 | _......_ | 8 | 75 |
| MIMAT0005051 | ppt-miR477d | 3 | _......_ | 8 | 75 |
| MIMAT0005511 | dme-miR-929-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004362 | ppt-miR477g-5p | 1 | __...... | 6 | 75 |
| MIMAT0004361 | ppt-miR477f | 1 | __...... | 6 | 75 |
| MIMAT0004360 | ppt-miR477a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0004359 | ppt-miR477c | 3 | _......_ | 8 | 75 |
| MIMAT0017277 | mmu-miR-504-3p | 6 | _......_ | 1 | 75 |
| MIMAT0004868 | mmu-miR-343 | 2 | _......_ | 7 | 75 |
| MIMAT0003900 | ppt-miR1211-5p | 6 | _......_ | 1 | 75 |
| MIMAT0014804 | mmu-miR-1249-5p | 8 | __...... | 3 | 75 |
| MIMAT0003312 | hsa-miR-642a-5p | 2 | __...... | 7 | 75 |
| MIMAT0026612 | hsa-miR-504-3p | 6 | ......__ | 1 | 75 |
| MIMAT0002075 | ptc-miR477b | 3 | _......_ | 8 | 75 |
| MIMAT0002074 | ptc-miR477a-5p | 3 | _......_ | 8 | 75 |
| MIMAT0031952 | dre-miR-30c-3p | 8 | ......__ | 3 | 75 |
| MIMAT0000598 | rno-miR-347 | 3 | __...... | 8 | 75 |
| MIMAT0004609 | hsa-miR-149-3p | 6 | _......_ | 1 | 75 |
