| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | actctcg | 7 | ||
| MIMAT0036843 | oha-miR-219-2-3p | 7 | ....... | 1 | 100 |
| MIMAT0031239 | stu-miR1919-3p | 8 | ....... | 2 | 100 |
| MIMAT0023544 | ame-miR-6002-3p | 7 | ....... | 1 | 100 |
| MIMAT0018898 | tca-miR-3897-5p | 2 | ....... | 8 | 100 |
| MIMAT0007913 | sly-miR1919c-3p | 8 | ....... | 2 | 100 |
| MIMAT0007912 | sly-miR1919b | 8 | ....... | 2 | 100 |
| MIMAT0007911 | sly-miR1919a | 8 | ....... | 2 | 100 |
| MIMAT0035201 | dme-miR-9369-5p | 8 | _...... | 3 | 85 |
| MIMAT0034608 | eca-miR-9063 | 8 | _...... | 3 | 85 |
| MIMAT0033280 | ppc-miR-8359-5p | 7 | _...... | 2 | 85 |
| MIMAT0033160 | ppc-miR-8364p-3p | 6 | _...... | 1 | 85 |
| MIMAT0033139 | ppc-miR-8364o-3p | 6 | _...... | 1 | 85 |
| MIMAT0033137 | ppc-miR-8306-3p | 8 | _...... | 3 | 85 |
| MIMAT0033031 | ppc-miR-8364c-2-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033029 | ppc-miR-8364k-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033027 | ppc-miR-8364j-3p | 6 | ......_ | 1 | 85 |
| MIMAT0033022 | ppc-miR-8268-5p | 3 | _...... | 8 | 85 |
| MIMAT0032911 | ppc-miR-8364d-3p | 6 | ......_ | 1 | 85 |
| MIMAT0031540 | ppe-miR477-5p | 1 | ......_ | 6 | 85 |
| MIMAT0031328 | stu-miR477b-5p | 1 | ......_ | 6 | 85 |
| MIMAT0030687 | prd-miR-7922-3p | 1 | _...... | 6 | 85 |
| MIMAT0030251 | bdi-miR7754-3p | 3 | _...... | 8 | 85 |
| MIMAT0029365 | lja-miR7539 | 7 | _...... | 2 | 85 |
| MIMAT0029289 | mes-miR477i | 1 | ......_ | 6 | 85 |
| MIMAT0029288 | mes-miR477h | 1 | ......_ | 6 | 85 |
| MIMAT0028295 | mml-miR-6794-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028159 | ssc-miR-7142-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026021 | mdm-miR477a | 1 | ......_ | 6 | 85 |
| MIMAT0026020 | mdm-miR477b | 1 | ......_ | 6 | 85 |
| MIMAT0027717 | mmu-miR-6908-3p | 3 | ......_ | 8 | 85 |
| MIMAT0025810 | gga-miR-6700-3p | 3 | ......_ | 8 | 85 |
| MIMAT0024721 | nta-miR477a | 1 | ......_ | 6 | 85 |
| MIMAT0023648 | bna-miR6028 | 8 | ......_ | 3 | 85 |
| MIMAT0023569 | tca-miR-6014-5p | 1 | ......_ | 6 | 85 |
| MIMAT0021123 | hsa-miR-5192 | 8 | ......_ | 3 | 85 |
| MIMAT0019698 | hsa-miR-4639-3p | 3 | ......_ | 8 | 85 |
| MIMAT0018474 | csi-miR473 | 1 | ......_ | 6 | 85 |
| MIMAT0018610 | ame-miR-3741 | 7 | _...... | 2 | 85 |
| MIMAT0017994 | hsa-miR-3615 | 2 | _...... | 7 | 85 |
| MIMAT0016779 | cin-miR-4171-5p | 3 | ......_ | 8 | 85 |
| MIMAT0014225 | aae-miR-2a-5p | 1 | ......_ | 6 | 85 |
| MIMAT0012720 | hvt-miR-H8 | 3 | _...... | 8 | 85 |
| MIMAT0012523 | dsi-miR-2582b-5p | 8 | ......_ | 3 | 85 |
| MIMAT0010024 | ppt-miR1023e-5p | 3 | ......_ | 8 | 85 |
| MIMAT0007614 | gga-miR-1717 | 1 | ......_ | 6 | 85 |
| MIMAT0015265 | cin-miR-281-5p | 8 | ......_ | 3 | 85 |
| MIMAT0005108 | ppt-miR1023d-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005106 | ppt-miR1023c-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005104 | ppt-miR1023b-5p | 3 | ......_ | 8 | 85 |
| MIMAT0005102 | ppt-miR1023a-5p | 3 | ......_ | 8 | 85 |
| MIMAT0002062 | ptc-miR473a-5p | 1 | ......_ | 6 | 85 |
