| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | actgacct | 8 | ||
| MIMAT0004478 | hiv1-miR-N367 | 1 | ........ | 8 | 100 |
| MIMAT0036616 | tch-miR-192-5p | 1 | _....... | 7 | 87 |
| MIMAT0036024 | chi-miR-192-5p | 1 | _....... | 7 | 87 |
| MIMAT0035158 | efu-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0034903 | efu-miR-9271 | 8 | _....... | 2 | 87 |
| MIMAT0034651 | eca-miR-9104 | 1 | _....... | 7 | 87 |
| MIMAT0034462 | eca-miR-8933 | 8 | _....... | 2 | 87 |
| MIMAT0031724 | bbe-miR-92d-5p | 7 | _....... | 1 | 87 |
| MIMAT0027730 | mmu-miR-6915-5p | 7 | _....... | 1 | 87 |
| MIMAT0024119 | ggo-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0023824 | cgr-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0020079 | bfl-miR-92d-5p | 7 | _....... | 1 | 87 |
| MIMAT0019291 | oar-miR-3956-3p | 2 | _....... | 8 | 87 |
| MIMAT0018617 | tgu-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0016679 | cin-miR-4097-3p | 7 | _....... | 1 | 87 |
| MIMAT0015786 | ppy-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0013910 | ssc-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0013049 | eca-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0008057 | ptr-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0006632 | cfa-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0006224 | mml-miR-192-5p | 1 | _....... | 7 | 87 |
| MIMAT0007016 | oan-miR-192-5p | 1 | _....... | 7 | 87 |
| MIMAT0003820 | bta-miR-192 | 1 | _....... | 7 | 87 |
| MIMAT0003174 | rno-miR-540-3p | 7 | _....... | 1 | 87 |
| MIMAT0003167 | mmu-miR-540-3p | 7 | _....... | 1 | 87 |
| MIMAT0000867 | rno-miR-192-5p | 1 | _....... | 7 | 87 |
| MIMAT0000517 | mmu-miR-192-5p | 1 | _....... | 7 | 87 |
| MIMAT0000222 | hsa-miR-192-5p | 1 | _....... | 7 | 87 |
| MIMAT0034925 | efu-miR-215 | 1 | .a...... | 8 | 87 |
| MIMAT0032864 | ppc-miR-8217-5p | 8 | ......g. | 1 | 87 |
| MIMAT0028843 | mdo-miR-7386c-3p | 1 | .a...... | 8 | 87 |
| MIMAT0021175 | mtr-miR5217 | 8 | .a...... | 1 | 87 |
| MIMAT0011997 | bta-miR-2427 | 8 | .a...... | 1 | 87 |
| MIMAT0037233 | ata-miR167d-3p | 6 | __...... | 1 | 75 |
| MIMAT0037175 | ata-miR167b-3p | 6 | __...... | 1 | 75 |
| MIMAT0037098 | ata-miR5070-5p | 2 | _......_ | 7 | 75 |
| MIMAT0037064 | ssc-miR-6782-3p | 1 | __...... | 6 | 75 |
| MIMAT0036853 | oha-miR-223-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036831 | oha-miR-215-5p | 2 | __...... | 7 | 75 |
| MIMAT0036072 | chi-miR-223-3p | 7 | ......__ | 2 | 75 |
| MIMAT0036060 | chi-miR-215-5p | 2 | __...... | 7 | 75 |
| MIMAT0035458 | sly-miR167b-3p | 6 | __...... | 1 | 75 |
| MIMAT0035423 | nve-miR-9462 | 1 | __...... | 6 | 75 |
| MIMAT0035198 | efu-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0035134 | efu-miR-152 | 6 | ......__ | 1 | 75 |
| MIMAT0034983 | efu-miR-9310 | 1 | __...... | 6 | 75 |
| MIMAT0034975 | efu-miR-9302 | 6 | ......__ | 1 | 75 |
| MIMAT0034645 | eca-miR-9098 | 1 | __...... | 6 | 75 |
| MIMAT0034348 | cfa-miR-8853 | 2 | _......_ | 7 | 75 |
| MIMAT0034346 | cfa-miR-8851 | 1 | __...... | 6 | 75 |
| MIMAT0034252 | gra-miR8704 | 7 | ......__ | 2 | 75 |
| MIMAT0033902 | atr-miR8610.2 | 3 | _......_ | 8 | 75 |
| MIMAT0033783 | pxy-miR-8535-5p | 3 | ......__ | 8 | 75 |
| MIMAT0033773 | pxy-miR-8530-3p | 8 | __...... | 3 | 75 |
| MIMAT0033498 | str-miR-7880y-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033358 | str-miR-7880k-5p | 6 | _......_ | 1 | 75 |
| MIMAT0033323 | str-miR-7880g-5p | 6 | _......_ | 1 | 75 |
| MIMAT0032758 | ssa-miR-8163-3p | 8 | __...... | 3 | 75 |
| MIMAT0032440 | ssa-miR-192a-5p | 2 | __...... | 7 | 75 |
| MIMAT0031736 | bbe-miR-4857-3p | 8 | _......_ | 3 | 75 |
| MIMAT0031366 | stu-miR169d-3p | 8 | __...... | 3 | 75 |
| MIMAT0030518 | prd-miR-7880a-5p | 1 | __...... | 6 | 75 |
| MIMAT0030312 | bdi-miR7779-5p | 7 | __...... | 2 | 75 |
| MIMAT0030288 | bdi-miR7769-5p | 8 | ......__ | 3 | 75 |
| MIMAT0030092 | bdi-miR167e-3p | 6 | __...... | 1 | 75 |
| MIMAT0029567 | ipu-miR-7568 | 1 | _......_ | 6 | 75 |
| MIMAT0029446 | ipu-miR-192 | 2 | __...... | 7 | 75 |
| MIMAT0029158 | ghr-miR7510a | 7 | __...... | 2 | 75 |
| MIMAT0029052 | gga-miR-7449-5p | 6 | __...... | 1 | 75 |
| MIMAT0028895 | mdo-miR-7394b-3p | 3 | __...... | 8 | 75 |
| MIMAT0028891 | mdo-miR-7396-3p | 1 | __...... | 6 | 75 |
| MIMAT0028885 | mdo-miR-7393-3p | 3 | __...... | 8 | 75 |
| MIMAT0028322 | mml-miR-548i-5p | 8 | __...... | 3 | 75 |
| MIMAT0026250 | ccr-miR-192 | 2 | __...... | 7 | 75 |
| MIMAT0028083 | mmu-miR-7088-3p | 2 | __...... | 7 | 75 |
| MIMAT0027929 | mmu-miR-7012-3p | 1 | __...... | 6 | 75 |
| MIMAT0027879 | mmu-miR-6988-3p | 1 | __...... | 6 | 75 |
| MIMAT0027807 | mmu-miR-6953-3p | 1 | _......_ | 6 | 75 |
| MIMAT0027611 | hsa-miR-6855-3p | 3 | ......__ | 8 | 75 |
| MIMAT0027543 | hsa-miR-6821-3p | 1 | __...... | 6 | 75 |
| MIMAT0027502 | hsa-miR-6801-5p | 7 | _......_ | 2 | 75 |
| MIMAT0027419 | hsa-miR-6759-3p | 1 | __...... | 6 | 75 |
| MIMAT0025555 | bta-miR-3660 | 1 | ......__ | 6 | 75 |
| MIMAT0025006 | hme-miR-6302-1-5p | 3 | ......__ | 8 | 75 |
| MIMAT0024388 | ppy-miR-3661 | 1 | __...... | 6 | 75 |
| MIMAT0024371 | ppy-miR-3660 | 2 | ......__ | 7 | 75 |
| MIMAT0024040 | ptr-miR-3660 | 1 | ......__ | 6 | 75 |
| MIMAT0023853 | cgr-miR-215-5p | 2 | __...... | 7 | 75 |
| MIMAT0023460 | hco-miR-5957 | 6 | _......_ | 1 | 75 |
| MIMAT0022810 | sha-miR-125b | 8 | __...... | 3 | 75 |
| MIMAT0022630 | ola-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0022624 | ola-miR-192-5p | 1 | __...... | 6 | 75 |
| MIMAT0022351 | cin-miR-5612-5p | 7 | ......__ | 2 | 75 |
| MIMAT0022166 | osa-miR5531 | 1 | ......__ | 6 | 75 |
| MIMAT0022090 | aca-miR-5435b-3p | 3 | __...... | 8 | 75 |
| MIMAT0021894 | aca-miR-223-3p | 7 | ......__ | 2 | 75 |
| MIMAT0021873 | aca-miR-215-5p | 2 | __...... | 7 | 75 |
| MIMAT0020725 | bdi-miR5178-3p | 2 | _......_ | 7 | 75 |
| MIMAT0022979 | hsa-miR-4750-3p | 2 | _......_ | 7 | 75 |
| MIMAT0019792 | hsa-miR-4697-3p | 7 | ......__ | 2 | 75 |
| MIMAT0019497 | pma-miR-192-5p | 2 | __...... | 7 | 75 |
| MIMAT0019359 | hsa-miR-3974 | 8 | __...... | 3 | 75 |
| MIMAT0019270 | oar-miR-1193-3p | 7 | __...... | 2 | 75 |
| MIMAT0019243 | oar-miR-370-5p | 7 | __...... | 2 | 75 |
| MIMAT0019050 | hsa-miR-4513 | 3 | ......__ | 8 | 75 |
| MIMAT0018082 | hsa-miR-3661 | 1 | __...... | 6 | 75 |
| MIMAT0018081 | hsa-miR-3660 | 1 | ......__ | 6 | 75 |
| MIMAT0016877 | hsa-miR-4256 | 3 | _......_ | 8 | 75 |
| MIMAT0017859 | rno-miR-1193-3p | 7 | __...... | 2 | 75 |
| MIMAT0016344 | ahy-miR3518 | 1 | __...... | 6 | 75 |
| MIMAT0016343 | ahy-miR3517 | 1 | _......_ | 6 | 75 |
| MIMAT0017480 | aly-miR167d-3p | 6 | __...... | 1 | 75 |
| MIMAT0017478 | aly-miR167c-3p | 6 | __...... | 1 | 75 |
| MIMAT0014931 | mmu-miR-344f-5p | 7 | ......__ | 2 | 75 |
| MIMAT0014755 | api-miR-3019 | 2 | ......__ | 7 | 75 |
| MIMAT0014599 | tgu-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0014577 | tgu-miR-215-5p | 2 | __...... | 7 | 75 |
| MIMAT0015335 | zma-miR393c-3p | 6 | ......__ | 1 | 75 |
| MIMAT0013205 | eca-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0013190 | eca-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0013124 | eca-miR-1193 | 7 | __...... | 2 | 75 |
| MIMAT0013101 | eca-miR-1898 | 6 | __...... | 1 | 75 |
| MIMAT0012751 | mdo-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0012364 | dps-miR-2552-5p | 8 | __...... | 3 | 75 |
| MIMAT0012361 | dps-miR-2550-3p | 1 | __...... | 6 | 75 |
| MIMAT0012001 | bta-miR-2431-5p | 7 | __...... | 2 | 75 |
| MIMAT0011852 | bta-miR-2323 | 1 | __...... | 6 | 75 |
| MIMAT0010192 | ssc-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0009965 | bta-miR-1193 | 7 | __...... | 2 | 75 |
| MIMAT0009852 | cfa-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0009848 | cfa-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0009808 | nve-miR-2040b-5p | 8 | __...... | 3 | 75 |
| MIMAT0009400 | mmu-miR-1936 | 3 | ......__ | 8 | 75 |
| MIMAT0009270 | bta-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0011144 | xla-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0007875 | mmu-miR-1898 | 6 | __...... | 1 | 75 |
| MIMAT0026857 | mml-miR-370-5p | 7 | __...... | 2 | 75 |
| MIMAT0007641 | gga-miR-1738 | 1 | ......__ | 6 | 75 |
| MIMAT0007569 | gga-miR-1682 | 8 | _......_ | 3 | 75 |
| MIMAT0007242 | oan-miR-1421x-5p | 7 | __...... | 2 | 75 |
| MIMAT0007022 | oan-miR-1361-3p | 1 | __...... | 6 | 75 |
| MIMAT0007020 | oan-miR-223-3p | 7 | ......__ | 2 | 75 |
| MIMAT0007000 | oan-miR-215-5p | 2 | __...... | 7 | 75 |
| MIMAT0006965 | oan-miR-1421b-5p | 8 | __...... | 3 | 75 |
| MIMAT0026755 | oan-miR-1420e-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005587 | mml-miR-1232 | 1 | _......_ | 6 | 75 |
| MIMAT0005851 | mmu-miR-1193-3p | 7 | __...... | 2 | 75 |
| MIMAT0004917 | hsa-miR-888-3p | 2 | ......__ | 7 | 75 |
| MIMAT0004135 | mdo-miR-223-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026661 | mdo-miR-125b-1-3p | 8 | __...... | 3 | 75 |
| MIMAT0003929 | mdv1-miR-M8-3p | 2 | __...... | 7 | 75 |
| MIMAT0003797 | bta-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0003713 | ebv-miR-BART15 | 6 | ......__ | 1 | 75 |
| MIMAT0003634 | xtr-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0003628 | xtr-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0003615 | xtr-miR-192 | 2 | __...... | 7 | 75 |
| MIMAT0017202 | rno-miR-370-5p | 7 | __...... | 2 | 75 |
| MIMAT0003118 | rno-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0002942 | tni-miR-192 | 2 | __...... | 7 | 75 |
| MIMAT0002941 | fru-miR-192 | 2 | __...... | 7 | 75 |
| MIMAT0002895 | tni-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0002894 | fru-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0002736 | mne-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0002734 | ggo-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0002732 | ppy-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0002730 | ptr-miR-215 | 2 | __...... | 7 | 75 |
| MIMAT0002728 | mml-miR-215-5p | 2 | __...... | 7 | 75 |
| MIMAT0002593 | ppa-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0002592 | sla-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0002591 | ppy-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0002590 | ggo-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0002589 | ptr-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0002588 | mml-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0001290 | dre-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0001275 | dre-miR-192 | 2 | __...... | 7 | 75 |
| MIMAT0001140 | gga-miR-223 | 7 | ......__ | 2 | 75 |
| MIMAT0001134 | gga-miR-215-5p | 2 | __...... | 7 | 75 |
| MIMAT0017174 | mmu-miR-370-5p | 7 | __...... | 2 | 75 |
| MIMAT0022874 | osa-miR167h-3p | 6 | __...... | 1 | 75 |
| MIMAT0031917 | ath-miR167c-3p | 7 | __...... | 2 | 75 |
| MIMAT0000904 | mmu-miR-215-5p | 2 | __...... | 7 | 75 |
| MIMAT0000892 | rno-miR-223-3p | 7 | ......__ | 2 | 75 |
| MIMAT0026483 | hsa-miR-370-5p | 7 | __...... | 2 | 75 |
| MIMAT0000665 | mmu-miR-223-3p | 7 | ......__ | 2 | 75 |
| MIMAT0000595 | mmu-miR-345-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000594 | rno-miR-345-5p | 3 | _......_ | 8 | 75 |
| MIMAT0000280 | hsa-miR-223-3p | 7 | ......__ | 2 | 75 |
| MIMAT0000272 | hsa-miR-215-5p | 2 | __...... | 7 | 75 |
