| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | acttgtgg | 8 | ||
| MIMAT0031581 | bbe-miR-125b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0028695 | mdo-miR-7342-3p | 8 | ......._ | 2 | 87 |
| MIMAT0023744 | cgr-miR-125b-3p | 8 | ......._ | 2 | 87 |
| MIMAT0022360 | mmu-miR-5616-3p | 2 | ......._ | 8 | 87 |
| MIMAT0022134 | osa-miR5501 | 2 | _....... | 8 | 87 |
| MIMAT0018007 | vvi-miR3623-5p | 8 | ......._ | 2 | 87 |
| MIMAT0017887 | rno-miR-3588 | 8 | ......._ | 2 | 87 |
| MIMAT0014356 | cqu-miR-125-3p | 8 | ......._ | 2 | 87 |
| MIMAT0010007 | bfl-miR-125b | 8 | ......._ | 2 | 87 |
| MIMAT0005833 | mmu-miR-669d-5p | 1 | ......._ | 7 | 87 |
| MIMAT0004603 | hsa-miR-125b-2-3p | 8 | ......._ | 2 | 87 |
| MIMAT0036947 | oha-miR-7-2-3p | 8 | ......t. | 1 | 87 |
| MIMAT0032700 | ssa-miR-7a-7-3p | 8 | ......t. | 1 | 87 |
| MIMAT0032699 | ssa-miR-7a-6-3p | 8 | ......t. | 1 | 87 |
| MIMAT0032698 | ssa-miR-7a-5-3p | 8 | ......t. | 1 | 87 |
| MIMAT0032697 | ssa-miR-7a-4-3p | 8 | ......t. | 1 | 87 |
| MIMAT0032695 | ssa-miR-7a-2-3p | 8 | ......t. | 1 | 87 |
| MIMAT0032694 | ssa-miR-7a-1-3p | 8 | ......t. | 1 | 87 |
| MIMAT0029975 | mtr-miR2664b | 1 | .a...... | 8 | 87 |
| MIMAT0029103 | gga-miR-7474-3p | 1 | .t...... | 8 | 87 |
| MIMAT0021001 | gma-miR482c-5p | 1 | .t...... | 8 | 87 |
| MIMAT0019371 | pma-miR-7a-3p | 8 | ......t. | 1 | 87 |
| MIMAT0018723 | tca-miR-3839-3p | 1 | ......t. | 8 | 87 |
| MIMAT0013471 | mtr-miR2664a | 1 | .a...... | 8 | 87 |
| MIMAT0017091 | rno-miR-7a-2-3p | 8 | ......t. | 1 | 87 |
| MIMAT0017071 | mmu-miR-7b-3p | 8 | ......t. | 1 | 87 |
| MIMAT0017070 | mmu-miR-7a-2-3p | 8 | ......t. | 1 | 87 |
| MIMAT0037012 | ssc-miR-9794-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036649 | oha-miR-100-3p | 7 | _......_ | 2 | 75 |
| MIMAT0036357 | gma-miR9737 | 1 | __...... | 6 | 75 |
| MIMAT0036233 | chi-miR-449b-3p | 8 | __...... | 3 | 75 |
| MIMAT0035926 | chi-miR-125b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0035769 | tae-miR1127b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0034878 | efu-miR-544 | 6 | ......__ | 1 | 75 |
| MIMAT0034598 | eca-miR-9054 | 3 | _......_ | 8 | 75 |
| MIMAT0034436 | cfa-miR-8905 | 7 | __...... | 2 | 75 |
| MIMAT0033450 | str-miR-8391-5p | 1 | __...... | 6 | 75 |
| MIMAT0033266 | ppc-miR-8353-5p | 8 | ......__ | 3 | 75 |
| MIMAT0033187 | ppc-miR-8245b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0030949 | stu-miR8038b-5p | 2 | _......_ | 7 | 75 |
| MIMAT0030948 | stu-miR8038a-5p | 2 | _......_ | 7 | 75 |
| MIMAT0029139 | ghr-miR7494 | 3 | _......_ | 8 | 75 |
| MIMAT0029003 | oan-miR-7426-3p | 8 | ......__ | 3 | 75 |
| MIMAT0028487 | mdo-miR-7260-3p | 7 | __...... | 2 | 75 |
| MIMAT0028402 | mmu-miR-7217-5p | 2 | ......__ | 7 | 75 |
| MIMAT0026437 | sbi-miR6230-3p | 8 | ......__ | 3 | 75 |
| MIMAT0026397 | sbi-miR6218-3p | 6 | ......__ | 1 | 75 |
| MIMAT0027664 | hsa-miR-6882-5p | 7 | ......__ | 2 | 75 |
| MIMAT0027492 | hsa-miR-6796-5p | 1 | __...... | 6 | 75 |
| MIMAT0027418 | hsa-miR-6759-5p | 1 | __...... | 6 | 75 |
| MIMAT0025455 | hsa-miR-6500-3p | 3 | ......__ | 8 | 75 |
| MIMAT0025212 | ptc-miR6473 | 7 | __...... | 2 | 75 |
| MIMAT0025177 | mmu-miR-873b | 6 | ......__ | 1 | 75 |
| MIMAT0024927 | gma-miR1516d | 3 | ......__ | 8 | 75 |
| MIMAT0024420 | mse-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0024286 | ggo-miR-1264 | 6 | ......__ | 1 | 75 |
| MIMAT0022215 | mtr-miR5557-5p | 7 | ......__ | 2 | 75 |
| MIMAT0022189 | cel-miR-5549-5p | 1 | _......_ | 6 | 75 |
| MIMAT0022069 | aca-miR-5447 | 1 | __...... | 6 | 75 |
| MIMAT0021257 | mtr-miR5257 | 6 | ......__ | 1 | 75 |
| MIMAT0020284 | ssp-miR444b.1 | 1 | __...... | 6 | 75 |
| MIMAT0021088 | osa-miR5144-5p | 3 | _......_ | 8 | 75 |
| MIMAT0020629 | mmu-miR-5121 | 3 | _......_ | 8 | 75 |
| MIMAT0020520 | ath-miR5016 | 3 | _......_ | 8 | 75 |
| MIMAT0019980 | hsa-miR-4801 | 8 | _......_ | 3 | 75 |
| MIMAT0019889 | hsa-miR-4752 | 1 | __...... | 6 | 75 |
| MIMAT0019854 | hsa-miR-4731-3p | 8 | _......_ | 3 | 75 |
| MIMAT0019650 | pma-miR-4616 | 2 | __...... | 7 | 75 |
| MIMAT0019001 | hsa-miR-4474-3p | 1 | __...... | 6 | 75 |
| MIMAT0018979 | hsa-miR-4457 | 7 | _......_ | 2 | 75 |
| MIMAT0018328 | gma-miR4409 | 8 | ......__ | 3 | 75 |
| MIMAT0018237 | gma-miR4348a | 3 | ......__ | 8 | 75 |
| MIMAT0018876 | tca-miR-3889-5p | 1 | ......__ | 6 | 75 |
| MIMAT0018833 | tca-miR-3870-3p | 8 | __...... | 3 | 75 |
| MIMAT0018764 | tca-miR-3854-5p | 7 | __...... | 2 | 75 |
| MIMAT0016727 | cin-miR-4131-3p | 1 | __...... | 6 | 75 |
| MIMAT0016579 | cin-miR-4045-5p | 6 | __...... | 1 | 75 |
| MIMAT0016514 | cin-miR-4013a-5p | 3 | ......__ | 8 | 75 |
| MIMAT0017878 | rno-miR-3585-5p | 8 | _......_ | 3 | 75 |
| MIMAT0016380 | gga-miR-219b | 6 | _......_ | 1 | 75 |
| MIMAT0016298 | sja-miR-3489 | 7 | __...... | 2 | 75 |
| MIMAT0016065 | ppy-miR-624 | 6 | _......_ | 1 | 75 |
| MIMAT0016023 | ppy-miR-581 | 2 | _......_ | 7 | 75 |
| MIMAT0015940 | ppy-miR-513b | 8 | _......_ | 3 | 75 |
| MIMAT0015587 | bmo-miR-3388-5p | 6 | ......__ | 1 | 75 |
| MIMAT0015557 | bmo-miR-3370 | 2 | ......__ | 7 | 75 |
| MIMAT0014729 | api-miR-307 | 6 | __...... | 1 | 75 |
| MIMAT0014628 | tgu-miR-125-1-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026968 | tgu-miR-2973-3p | 1 | ......__ | 6 | 75 |
| MIMAT0014464 | tgu-miR-219b | 6 | _......_ | 1 | 75 |
| MIMAT0014397 | cqu-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0014293 | aae-miR-210 | 1 | _......_ | 6 | 75 |
| MIMAT0013532 | cte-miR-2685-5p | 1 | _......_ | 6 | 75 |
| MIMAT0011893 | bta-miR-2356 | 2 | _......_ | 7 | 75 |
| MIMAT0011738 | ppc-miR-2241c | 8 | _......_ | 3 | 75 |
| MIMAT0011412 | sme-miR-2154-3p | 6 | ......__ | 1 | 75 |
| MIMAT0010143 | lmi-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0009793 | nve-miR-2035-3p | 2 | _......_ | 7 | 75 |
| MIMAT0032049 | dvi-miR-125-3p | 6 | ......__ | 1 | 75 |
| MIMAT0008297 | ptr-miR-643 | 1 | ......__ | 6 | 75 |
| MIMAT0008284 | ptr-miR-624 | 6 | _......_ | 1 | 75 |
| MIMAT0008254 | ptr-miR-581 | 2 | _......_ | 7 | 75 |
| MIMAT0006484 | mml-miR-643 | 1 | ......__ | 6 | 75 |
| MIMAT0006470 | mml-miR-624 | 6 | _......_ | 1 | 75 |
| MIMAT0006442 | mml-miR-581 | 2 | _......_ | 7 | 75 |
| MIMAT0006033 | odi-miR-1481 | 6 | __...... | 1 | 75 |
| MIMAT0005972 | osa-miR444d.3 | 1 | __...... | 6 | 75 |
| MIMAT0007190 | oan-miR-383-3p | 6 | __...... | 1 | 75 |
| MIMAT0006993 | oan-miR-1359 | 8 | __...... | 3 | 75 |
| MIMAT0005788 | hsa-miR-513b-5p | 8 | _......_ | 3 | 75 |
| MIMAT0005785 | pbi-miR-513b | 8 | _......_ | 3 | 75 |
| MIMAT0005777 | ptr-miR-513b | 8 | _......_ | 3 | 75 |
| MIMAT0005767 | mml-miR-513b | 8 | _......_ | 3 | 75 |
| MIMAT0005759 | ssy-miR-513b | 8 | _......_ | 3 | 75 |
| MIMAT0005748 | age-miR-513a | 8 | _......_ | 3 | 75 |
| MIMAT0005746 | age-miR-513b | 8 | _......_ | 3 | 75 |
| MIMAT0005175 | ppt-miR1057 | 3 | _......_ | 8 | 75 |
| MIMAT0005111 | ppt-miR1025 | 8 | __...... | 3 | 75 |
| MIMAT0003313 | hsa-miR-643 | 1 | ......__ | 6 | 75 |
| MIMAT0004807 | hsa-miR-624-3p | 6 | _......_ | 1 | 75 |
| MIMAT0003246 | hsa-miR-581 | 2 | _......_ | 7 | 75 |
| MIMAT0031073 | mml-miR-125b-2-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026493 | gga-miR-125b-3p | 6 | ......__ | 1 | 75 |
| MIMAT0026467 | rno-miR-125b-2-3p | 6 | ......__ | 1 | 75 |
| MIMAT0020831 | dme-miR-125-3p | 6 | ......__ | 1 | 75 |
| MIMAT0000355 | dme-miR-210-3p | 1 | _......_ | 6 | 75 |
| MIMAT0004529 | mmu-miR-125b-2-3p | 6 | ......__ | 1 | 75 |
