| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaaatg | 7 | ||
| MIMAT0035353 | gsa-miR-9402-3p | 8 | ....... | 2 | 100 |
| MIMAT0022468 | hsa-miR-5680 | 2 | ....... | 8 | 100 |
| MIMAT0001564 | mghv-miR-M1-1-3p | 2 | ....... | 8 | 100 |
| MIMAT0036811 | oha-miR-203-3p | 3 | _...... | 8 | 85 |
| MIMAT0035445 | sly-miR5302b-5p | 2 | _...... | 7 | 85 |
| MIMAT0034197 | gra-miR8674b | 3 | ......_ | 8 | 85 |
| MIMAT0033823 | atr-miR8552a | 2 | _...... | 7 | 85 |
| MIMAT0033646 | sma-miR-8463-3p | 8 | ......_ | 3 | 85 |
| MIMAT0033267 | ppc-miR-8353-3p | 1 | _...... | 6 | 85 |
| MIMAT0033159 | ppc-miR-8364p-5p | 8 | _...... | 3 | 85 |
| MIMAT0033138 | ppc-miR-8364o-5p | 7 | _...... | 2 | 85 |
| MIMAT0033059 | ppc-miR-8364q-5p | 8 | _...... | 3 | 85 |
| MIMAT0032975 | ppc-miR-8253-3p | 3 | _...... | 8 | 85 |
| MIMAT0032487 | ssa-miR-203b-3p | 2 | _...... | 7 | 85 |
| MIMAT0032484 | ssa-miR-203a-3p | 3 | _...... | 8 | 85 |
| MIMAT0031745 | bma-miR-268 | 2 | _...... | 7 | 85 |
| MIMAT0031718 | bbe-miR-71-3p | 8 | _...... | 3 | 85 |
| MIMAT0029595 | cbr-miR-7589 | 3 | _...... | 8 | 85 |
| MIMAT0029351 | lja-miR7528 | 3 | _...... | 8 | 85 |
| MIMAT0028921 | mdo-miR-7398q-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028913 | mdo-miR-7398m-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028911 | mdo-miR-7398l-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028903 | mdo-miR-7398r-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028508 | mdo-miR-7269-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028348 | mml-miR-7194-5p | 3 | _...... | 8 | 85 |
| MIMAT0026262 | ccr-miR-203b-3p | 3 | _...... | 8 | 85 |
| MIMAT0026260 | ccr-miR-203a | 3 | _...... | 8 | 85 |
| MIMAT0025443 | pol-miR-203-3p | 3 | _...... | 8 | 85 |
| MIMAT0027282 | ppe-miR828-3p | 7 | _...... | 2 | 85 |
| MIMAT0024784 | hbr-miR2118 | 1 | _...... | 6 | 85 |
| MIMAT0027105 | mml-miR-4446-5p | 7 | _...... | 2 | 85 |
| MIMAT0022655 | ola-miR-203 | 3 | _...... | 8 | 85 |
| MIMAT0022516 | ssl-miR395 | 3 | _...... | 8 | 85 |
| MIMAT0022124 | osa-miR5491 | 2 | _...... | 7 | 85 |
| MIMAT0021911 | aca-miR-29a-1-5p | 8 | ......_ | 3 | 85 |
| MIMAT0021852 | aca-miR-203-3p | 3 | _...... | 8 | 85 |
| MIMAT0021085 | hsa-miR-5093 | 3 | _...... | 8 | 85 |
| MIMAT0020564 | osa-miR5076 | 1 | _...... | 6 | 85 |
| MIMAT0020509 | dme-miR-4916-3p | 8 | ......_ | 3 | 85 |
| MIMAT0019514 | pma-miR-203b-3p | 3 | _...... | 8 | 85 |
| MIMAT0019512 | pma-miR-203a-3p | 3 | _...... | 8 | 85 |
| MIMAT0019296 | oar-miR-539-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018241 | gma-miR4352a | 6 | ......_ | 1 | 85 |
| MIMAT0018669 | tca-miR-3821-3p | 6 | ......_ | 1 | 85 |
| MIMAT0016709 | cin-miR-4118-3p | 2 | _...... | 7 | 85 |
| MIMAT0016662 | cin-miR-4087-5p | 7 | _...... | 2 | 85 |
| MIMAT0015989 | ppy-miR-539 | 3 | ......_ | 8 | 85 |
| MIMAT0015797 | ppy-miR-203 | 3 | _...... | 8 | 85 |
| MIMAT0017742 | ath-miR841b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0015579 | bmo-miR-3384-5p | 2 | _...... | 7 | 85 |
| MIMAT0014605 | tgu-miR-203-3p | 3 | _...... | 8 | 85 |
| MIMAT0013167 | eca-miR-539 | 3 | ......_ | 8 | 85 |
| MIMAT0026949 | mdo-miR-875-3p | 3 | _...... | 8 | 85 |
| MIMAT0012040 | bta-miR-1434-3p | 3 | ......_ | 8 | 85 |
| MIMAT0012165 | sme-miR-2177-5p | 3 | ......_ | 8 | 85 |
| MIMAT0012163 | sme-miR-96b-3p | 8 | _...... | 3 | 85 |
| MIMAT0011224 | sme-miR-2148-5p | 1 | ......_ | 6 | 85 |
| MIMAT0009909 | cfa-miR-539 | 3 | ......_ | 8 | 85 |
| MIMAT0009866 | cfa-miR-203 | 3 | _...... | 8 | 85 |
| MIMAT0019142 | bfl-miR-71-3p | 8 | _...... | 3 | 85 |
| MIMAT0009342 | bta-miR-539 | 3 | ......_ | 8 | 85 |
| MIMAT0008214 | ptr-miR-539 | 3 | ......_ | 8 | 85 |
| MIMAT0008065 | ptr-miR-203 | 3 | _...... | 8 | 85 |
| MIMAT0015285 | osa-miR1882e-3p | 1 | _...... | 6 | 85 |
| MIMAT0006405 | mml-miR-539 | 3 | ......_ | 8 | 85 |
| MIMAT0006234 | mml-miR-203 | 3 | _...... | 8 | 85 |
| MIMAT0032022 | ath-miR841a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0004126 | mdo-miR-203 | 3 | _...... | 8 | 85 |
| MIMAT0015240 | cel-miR-788-3p | 2 | _...... | 7 | 85 |
| MIMAT0003695 | xtr-miR-203 | 3 | _...... | 8 | 85 |
| MIMAT0003176 | rno-miR-539-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003169 | mmu-miR-539-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003163 | hsa-miR-539-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003076 | tni-miR-203 | 3 | _...... | 8 | 85 |
| MIMAT0003075 | fru-miR-203 | 3 | _...... | 8 | 85 |
| MIMAT0001865 | dre-miR-203b-3p | 3 | _...... | 8 | 85 |
| MIMAT0001278 | dre-miR-203a-3p | 3 | _...... | 8 | 85 |
| MIMAT0001146 | gga-miR-203a | 3 | _...... | 8 | 85 |
| MIMAT0000876 | rno-miR-203a-3p | 3 | _...... | 8 | 85 |
| MIMAT0000264 | hsa-miR-203a-3p | 3 | _...... | 8 | 85 |
| MIMAT0000236 | mmu-miR-203-3p | 3 | _...... | 8 | 85 |
