| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaaccg | 7 | ||
| MIMAT0033588 | sma-miR-745-5p | 8 | ....... | 2 | 100 |
| MIMAT0025579 | bta-miR-2285v | 1 | ....... | 7 | 100 |
| MIMAT0018917 | smr-miR-3930-5p | 8 | ....... | 2 | 100 |
| MIMAT0036838 | oha-miR-218-2-3p | 8 | ......_ | 3 | 85 |
| MIMAT0036287 | chi-miR-671-3p | 8 | _...... | 3 | 85 |
| MIMAT0035290 | gsa-bantam-5p | 7 | _...... | 2 | 85 |
| MIMAT0030915 | stu-miR8018 | 3 | _...... | 8 | 85 |
| MIMAT0030673 | prd-miR-7907b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0031139 | aja-miR-671 | 8 | _...... | 3 | 85 |
| MIMAT0031111 | mdo-miR-218-2-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028403 | mmu-miR-7217-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026402 | sbi-miR6219-5p | 1 | _...... | 6 | 85 |
| MIMAT0026242 | ccr-miR-182-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025382 | ssc-miR-671-3p | 8 | _...... | 3 | 85 |
| MIMAT0024279 | ggo-miR-671 | 8 | _...... | 3 | 85 |
| MIMAT0024239 | ggo-miR-589 | 3 | ......_ | 8 | 85 |
| MIMAT0023997 | cgr-miR-671-3p | 8 | _...... | 3 | 85 |
| MIMAT0023695 | hsa-miR-6070 | 7 | _...... | 2 | 85 |
| MIMAT0023516 | spu-miR-5994 | 3 | _...... | 8 | 85 |
| MIMAT0023016 | bra-miR5718 | 3 | ......_ | 8 | 85 |
| MIMAT0022034 | aca-miR-5414 | 6 | ......_ | 1 | 85 |
| MIMAT0018893 | tca-miR-3895-3p | 3 | _...... | 8 | 85 |
| MIMAT0018862 | tca-miR-3883-5p | 3 | ......_ | 8 | 85 |
| MIMAT0017969 | ssc-miR-218-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016816 | cin-miR-4197-5p | 8 | _...... | 3 | 85 |
| MIMAT0016097 | ppy-miR-671-3p | 8 | _...... | 3 | 85 |
| MIMAT0016031 | ppy-miR-589 | 3 | ......_ | 8 | 85 |
| MIMAT0012949 | eca-miR-671-3p | 8 | _...... | 3 | 85 |
| MIMAT0012806 | ptr-miR-589 | 3 | ......_ | 8 | 85 |
| MIMAT0026955 | oan-miR-182-3p | 6 | ......_ | 1 | 85 |
| MIMAT0013328 | mtr-miR2614 | 6 | _...... | 1 | 85 |
| MIMAT0011160 | hsa-miR-2116-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009926 | cfa-miR-671 | 8 | _...... | 3 | 85 |
| MIMAT0009917 | cfa-miR-589 | 3 | ......_ | 8 | 85 |
| MIMAT0032052 | dvi-miR-263b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0008314 | ptr-miR-671 | 8 | _...... | 3 | 85 |
| MIMAT0008219 | ptr-miR-548b | 3 | ......_ | 8 | 85 |
| MIMAT0006506 | mml-miR-671-3p | 8 | _...... | 3 | 85 |
| MIMAT0006449 | mml-miR-589 | 3 | ......_ | 8 | 85 |
| MIMAT0005379 | cre-miR1144a.2 | 3 | _...... | 8 | 85 |
| MIMAT0005326 | rno-miR-671 | 8 | _...... | 3 | 85 |
| MIMAT0026680 | mdo-miR-218-1-3p | 8 | ......_ | 3 | 85 |
| MIMAT0026672 | mdo-miR-182-3p | 8 | ......_ | 3 | 85 |
| MIMAT0004821 | mmu-miR-671-3p | 8 | _...... | 3 | 85 |
| MIMAT0004819 | hsa-miR-671-3p | 8 | _...... | 3 | 85 |
| MIMAT0004799 | hsa-miR-589-5p | 3 | ......_ | 8 | 85 |
| MIMAT0003254 | hsa-miR-548b-3p | 3 | ......_ | 8 | 85 |
| MIMAT0026589 | mml-miR-218-2-3p | 8 | ......_ | 3 | 85 |
| MIMAT0020822 | dme-miR-263b-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016995 | mmu-miR-182-3p | 8 | ......_ | 3 | 85 |
| MIMAT0016991 | mmu-miR-152-5p | 8 | ......_ | 3 | 85 |
