| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaagtc | 7 | ||
| MIMAT0035101 | efu-miR-9338 | 1 | ....... | 7 | 100 |
| MIMAT0034055 | gra-miR7484c | 1 | ....... | 7 | 100 |
| MIMAT0028249 | mml-miR-6505-3p | 8 | ....... | 2 | 100 |
| MIMAT0028065 | mmu-miR-7079-3p | 8 | ....... | 2 | 100 |
| MIMAT0025724 | gga-miR-6628-3p | 2 | ....... | 8 | 100 |
| MIMAT0025467 | hsa-miR-6505-3p | 8 | ....... | 2 | 100 |
| MIMAT0019273 | oar-miR-495-5p | 1 | ....... | 7 | 100 |
| MIMAT0015508 | bmo-miR-3321 | 2 | ....... | 8 | 100 |
| MIMAT0008415 | dan-miR-284 | 1 | ....... | 7 | 100 |
| MIMAT0005552 | mcmv-miR-m88-1-3p | 2 | ....... | 8 | 100 |
| MIMAT0036750 | oha-miR-1677b-3p | 7 | _...... | 2 | 85 |
| MIMAT0034936 | efu-miR-9285 | 8 | _...... | 3 | 85 |
| MIMAT0034326 | cfa-miR-8833 | 7 | _...... | 2 | 85 |
| MIMAT0034119 | gra-miR477 | 2 | _...... | 7 | 85 |
| MIMAT0033781 | pxy-miR-8534-3p | 1 | _...... | 6 | 85 |
| MIMAT0033446 | str-miR-240-5p | 1 | ......_ | 6 | 85 |
| MIMAT0033143 | ppc-miR-8229b-3p | 8 | _...... | 3 | 85 |
| MIMAT0032666 | ssa-miR-7132a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031615 | bbe-miR-2058-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031613 | bbe-miR-2057-5p | 3 | ......_ | 8 | 85 |
| MIMAT0030108 | bdi-miR5181c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0029160 | ghr-miR7511 | 1 | ......_ | 6 | 85 |
| MIMAT0028995 | oan-miR-7422a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028863 | mdo-miR-7386m-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028849 | mdo-miR-7386k-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028256 | mml-miR-548h-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025683 | gga-miR-6590-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027319 | ppe-miR6287 | 3 | ......_ | 8 | 85 |
| MIMAT0024536 | cca-miR6103-3p | 3 | ......_ | 8 | 85 |
| MIMAT0022474 | hsa-miR-548ax | 1 | ......_ | 6 | 85 |
| MIMAT0023001 | rgl-miR5576 | 1 | ......_ | 6 | 85 |
| MIMAT0021798 | aca-miR-1677b-3p | 7 | _...... | 2 | 85 |
| MIMAT0021796 | aca-miR-1677a | 7 | _...... | 2 | 85 |
| MIMAT0021110 | osa-miR5157b-3p | 1 | ......_ | 6 | 85 |
| MIMAT0021108 | osa-miR5157a-3p | 1 | ......_ | 6 | 85 |
| MIMAT0021029 | hsa-miR-548ao-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019968 | hsa-miR-4795-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019222 | hsa-miR-3682-5p | 8 | ......_ | 3 | 85 |
| MIMAT0018026 | vvi-miR477b-3p | 2 | _...... | 7 | 85 |
| MIMAT0016059 | ppy-miR-617 | 7 | _...... | 2 | 85 |
| MIMAT0026959 | tgu-miR-1677-3p | 8 | _...... | 3 | 85 |
| MIMAT0012051 | bta-miR-2464-5p | 6 | ......_ | 1 | 85 |
| MIMAT0011875 | bta-miR-2340 | 7 | _...... | 2 | 85 |
| MIMAT0011501 | cbr-miR-74b-5p | 8 | _...... | 3 | 85 |
| MIMAT0009984 | bfl-miR-2058-5p | 3 | ......_ | 8 | 85 |
| MIMAT0009983 | bfl-miR-2057 | 3 | ......_ | 8 | 85 |
| MIMAT0009756 | nve-miR-2023-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009437 | mmu-miR-1964-3p | 8 | _...... | 3 | 85 |
| MIMAT0009087 | dya-miR-284 | 2 | _...... | 7 | 85 |
| MIMAT0008902 | dsi-miR-284 | 2 | _...... | 7 | 85 |
| MIMAT0008798 | dse-miR-284 | 2 | _...... | 7 | 85 |
| MIMAT0008708 | dpe-miR-284 | 2 | _...... | 7 | 85 |
| MIMAT0008513 | der-miR-284 | 2 | _...... | 7 | 85 |
| MIMAT0008279 | ptr-miR-617 | 7 | _...... | 2 | 85 |
| MIMAT0007721 | gga-miR-1804 | 3 | ......_ | 8 | 85 |
| MIMAT0007563 | gga-miR-1677-3p | 7 | _...... | 2 | 85 |
| MIMAT0006969 | oan-miR-1421d-5p | 3 | _...... | 8 | 85 |
| MIMAT0003286 | hsa-miR-617 | 7 | _...... | 2 | 85 |
| MIMAT0001248 | dps-miR-284 | 2 | _...... | 7 | 85 |
| MIMAT0020319 | cel-miR-73-5p | 8 | _...... | 3 | 85 |
