| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaagtt | 7 | ||
| MIMAT0033446 | str-miR-240-5p | 1 | ....... | 7 | 100 |
| MIMAT0030714 | prd-miR-35a-5p | 7 | ....... | 1 | 100 |
| MIMAT0029160 | ghr-miR7511 | 1 | ....... | 7 | 100 |
| MIMAT0023001 | rgl-miR5576 | 1 | ....... | 7 | 100 |
| MIMAT0021548 | asu-miR-5348-5p | 2 | ....... | 8 | 100 |
| MIMAT0021110 | osa-miR5157b-3p | 1 | ....... | 7 | 100 |
| MIMAT0021108 | osa-miR5157a-3p | 1 | ....... | 7 | 100 |
| MIMAT0011792 | bta-miR-2284i | 2 | ....... | 8 | 100 |
| MIMAT0036345 | gma-miR9727 | 2 | _...... | 7 | 85 |
| MIMAT0036200 | chi-miR-382-5p | 1 | _...... | 6 | 85 |
| MIMAT0035978 | chi-miR-148b-5p | 1 | _...... | 6 | 85 |
| MIMAT0035101 | efu-miR-9338 | 1 | ......_ | 6 | 85 |
| MIMAT0034874 | efu-miR-9243c | 7 | _...... | 2 | 85 |
| MIMAT0034055 | gra-miR7484c | 1 | ......_ | 6 | 85 |
| MIMAT0033600 | sma-miR-8445-5p | 6 | _...... | 1 | 85 |
| MIMAT0032666 | ssa-miR-7132a-3p | 3 | ......_ | 8 | 85 |
| MIMAT0031615 | bbe-miR-2058-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031613 | bbe-miR-2057-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031564 | ppe-miR8133-3p | 7 | _...... | 2 | 85 |
| MIMAT0030108 | bdi-miR5181c-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028995 | oan-miR-7422a-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028863 | mdo-miR-7386m-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028849 | mdo-miR-7386k-3p | 3 | ......_ | 8 | 85 |
| MIMAT0028576 | mdo-miR-7296-5p | 1 | _...... | 6 | 85 |
| MIMAT0028256 | mml-miR-548h-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028249 | mml-miR-6505-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028065 | mmu-miR-7079-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027731 | mmu-miR-6915-3p | 7 | _...... | 2 | 85 |
| MIMAT0025683 | gga-miR-6590-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025467 | hsa-miR-6505-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027319 | ppe-miR6287 | 3 | ......_ | 8 | 85 |
| MIMAT0024551 | cca-miR6112 | 1 | _...... | 6 | 85 |
| MIMAT0024536 | cca-miR6103-3p | 3 | ......_ | 8 | 85 |
| MIMAT0023947 | cgr-miR-382 | 1 | _...... | 6 | 85 |
| MIMAT0023778 | cgr-miR-148b-5p | 1 | _...... | 6 | 85 |
| MIMAT0022474 | hsa-miR-548ax | 1 | ......_ | 6 | 85 |
| MIMAT0021782 | aca-miR-148b-5p | 1 | _...... | 6 | 85 |
| MIMAT0021029 | hsa-miR-548ao-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019968 | hsa-miR-4795-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019751 | hsa-miR-4670-3p | 2 | _...... | 7 | 85 |
| MIMAT0019306 | oar-miR-382-5p | 1 | _...... | 6 | 85 |
| MIMAT0019273 | oar-miR-495-5p | 1 | ......_ | 6 | 85 |
| MIMAT0019222 | hsa-miR-3682-5p | 8 | ......_ | 3 | 85 |
| MIMAT0015872 | ppy-miR-382 | 1 | _...... | 6 | 85 |
| MIMAT0015567 | bmo-miR-3377-5p | 2 | _...... | 7 | 85 |
| MIMAT0022955 | ssc-miR-148b-5p | 1 | _...... | 6 | 85 |
| MIMAT0013150 | eca-miR-382 | 1 | _...... | 6 | 85 |
| MIMAT0012971 | eca-miR-148b-5p | 1 | _...... | 6 | 85 |
| MIMAT0026953 | mml-miR-543-5p | 1 | _...... | 6 | 85 |
| MIMAT0013735 | bmo-miR-2824 | 6 | _...... | 1 | 85 |
| MIMAT0013267 | mtr-miR2591 | 8 | _...... | 3 | 85 |
| MIMAT0012051 | bta-miR-2464-5p | 6 | ......_ | 1 | 85 |
| MIMAT0009984 | bfl-miR-2058-5p | 3 | ......_ | 8 | 85 |
| MIMAT0009983 | bfl-miR-2057 | 3 | ......_ | 8 | 85 |
| MIMAT0009756 | nve-miR-2023-3p | 3 | ......_ | 8 | 85 |
| MIMAT0009308 | bta-miR-382 | 1 | _...... | 6 | 85 |
| MIMAT0008415 | dan-miR-284 | 1 | ......_ | 6 | 85 |
| MIMAT0008134 | ptr-miR-382 | 1 | _...... | 6 | 85 |
| MIMAT0026886 | mml-miR-495-5p | 1 | _...... | 6 | 85 |
| MIMAT0006311 | mml-miR-382-5p | 1 | _...... | 6 | 85 |
| MIMAT0026826 | mml-miR-148b-5p | 1 | _...... | 6 | 85 |
| MIMAT0007721 | gga-miR-1804 | 3 | ......_ | 8 | 85 |
| MIMAT0007276 | oan-miR-1418-5p | 7 | _...... | 2 | 85 |
| MIMAT0006973 | oan-miR-1421f-5p | 3 | _...... | 8 | 85 |
| MIMAT0017249 | mmu-miR-495-5p | 1 | _...... | 6 | 85 |
| MIMAT0003201 | rno-miR-382-5p | 1 | _...... | 6 | 85 |
| MIMAT0022924 | hsa-miR-495-5p | 1 | _...... | 6 | 85 |
| MIMAT0000747 | mmu-miR-382-5p | 1 | _...... | 6 | 85 |
| MIMAT0000737 | hsa-miR-382-5p | 1 | _...... | 6 | 85 |
| MIMAT0017036 | mmu-miR-148b-5p | 1 | _...... | 6 | 85 |
| MIMAT0004645 | rno-miR-148b-5p | 1 | _...... | 6 | 85 |
