| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaccgag | 8 | ||
| MIMAT0026461 | hhv6b-miR-Ro6-3-3p | 1 | ........ | 8 | 100 |
| MIMAT0036971 | bta-miR-4523 | 1 | _....... | 7 | 87 |
| MIMAT0035656 | bra-miR9552b-3p | 2 | _....... | 8 | 87 |
| MIMAT0019061 | hsa-miR-4523 | 1 | _....... | 7 | 87 |
| MIMAT0017616 | aly-miR833-3p | 2 | ......._ | 8 | 87 |
| MIMAT0007035 | oan-miR-1370 | 1 | _....... | 7 | 87 |
| MIMAT0004253 | ath-miR833a-3p | 2 | ......._ | 8 | 87 |
| MIMAT0032960 | ppc-miR-8248-5p | 8 | ......c. | 1 | 87 |
| MIMAT0026463 | hhv6b-miR-Ro6-4-3p | 1 | .t...... | 8 | 87 |
| MIMAT0037288 | ame-miR-9884 | 6 | _......_ | 1 | 75 |
| MIMAT0036881 | oha-miR-29a-2-5p | 2 | _......_ | 7 | 75 |
| MIMAT0036743 | oha-miR-15b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0036525 | tch-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0036221 | chi-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0036116 | chi-miR-29c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0035436 | sly-miR9469-3p | 8 | _......_ | 3 | 75 |
| MIMAT0035295 | gsa-miR-278-3p | 6 | __...... | 1 | 75 |
| MIMAT0034281 | cfa-miR-8791a | 8 | __...... | 3 | 75 |
| MIMAT0033856 | atr-miR8573 | 7 | ......__ | 2 | 75 |
| MIMAT0033264 | ppc-miR-8364l-5p | 7 | __...... | 2 | 75 |
| MIMAT0033121 | ppc-miR-8301-5p | 2 | __...... | 7 | 75 |
| MIMAT0033091 | ppc-miR-8289-5p | 1 | __...... | 6 | 75 |
| MIMAT0031015 | hsa-miR-8088 | 7 | __...... | 2 | 75 |
| MIMAT0030513 | prd-miR-7878-3p | 7 | ......__ | 2 | 75 |
| MIMAT0030210 | bdi-miR7737-5p | 8 | _......_ | 3 | 75 |
| MIMAT0029567 | ipu-miR-7568 | 3 | _......_ | 8 | 75 |
| MIMAT0027695 | mmu-miR-6897-3p | 6 | ......__ | 1 | 75 |
| MIMAT0023957 | cgr-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0023034 | tur-miR-276-5p | 8 | __...... | 3 | 75 |
| MIMAT0022117 | osa-miR5484 | 2 | __...... | 7 | 75 |
| MIMAT0022109 | pti-miR5476 | 2 | _......_ | 7 | 75 |
| MIMAT0021913 | aca-miR-29a-2-5p | 2 | _......_ | 7 | 75 |
| MIMAT0021791 | aca-miR-15b-3p | 2 | ......__ | 7 | 75 |
| MIMAT0021030 | hsa-miR-548ao-3p | 3 | ......__ | 8 | 75 |
| MIMAT0020226 | dme-miR-4987-3p | 6 | _......_ | 1 | 75 |
| MIMAT0019581 | pma-miR-4549 | 2 | ......__ | 7 | 75 |
| MIMAT0018302 | gma-miR4389 | 6 | _......_ | 1 | 75 |
| MIMAT0018807 | tca-miR-252b-3p | 8 | __...... | 3 | 75 |
| MIMAT0018690 | tca-miR-3830-5p | 6 | __...... | 1 | 75 |
| MIMAT0018641 | tca-miR-3809-3p | 7 | _......_ | 2 | 75 |
| MIMAT0015883 | ppy-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0017774 | esi-miR3467-3p | 8 | ......__ | 3 | 75 |
| MIMAT0014783 | api-miR-3017b | 6 | ......__ | 1 | 75 |
| MIMAT0014752 | api-miR-3017a | 6 | ......__ | 1 | 75 |
| MIMAT0031063 | tgu-miR-29a-2-5p | 2 | _......_ | 7 | 75 |
| MIMAT0013881 | ssc-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0013040 | eca-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0013759 | bmo-miR-2774c | 6 | __...... | 1 | 75 |
| MIMAT0013661 | bmo-miR-2774b | 6 | __...... | 1 | 75 |
| MIMAT0013658 | bmo-miR-2774a | 6 | __...... | 1 | 75 |
| MIMAT0013514 | mtr-miR2680e | 8 | __...... | 3 | 75 |
| MIMAT0013513 | mtr-miR2680d | 8 | __...... | 3 | 75 |
| MIMAT0013512 | mtr-miR2680c | 8 | __...... | 3 | 75 |
| MIMAT0013511 | mtr-miR2680b | 8 | __...... | 3 | 75 |
| MIMAT0013510 | mtr-miR2680a | 8 | __...... | 3 | 75 |
| MIMAT0012509 | dsi-miR-2577 | 3 | _......_ | 8 | 75 |
| MIMAT0026919 | bta-miR-29d-5p | 2 | _......_ | 7 | 75 |
| MIMAT0032093 | dvi-miR-100-3p | 3 | ......__ | 8 | 75 |
| MIMAT0008142 | ptr-miR-423 | 8 | __...... | 3 | 75 |
| MIMAT0007808 | osa-miR1861m | 6 | ......__ | 1 | 75 |
| MIMAT0007806 | osa-miR1861k | 6 | ......__ | 1 | 75 |
| MIMAT0007805 | osa-miR1861j | 6 | ......__ | 1 | 75 |
| MIMAT0007803 | osa-miR1861h | 6 | ......__ | 1 | 75 |
| MIMAT0007800 | osa-miR1861e | 6 | ......__ | 1 | 75 |
| MIMAT0020361 | cel-miR-58b-5p | 8 | __...... | 3 | 75 |
| MIMAT0006322 | mml-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0009167 | oan-miR-29a-2-5p | 2 | _......_ | 7 | 75 |
| MIMAT0005551 | mcmv-miR-m88-1-5p | 3 | _......_ | 8 | 75 |
| MIMAT0005542 | mcmv-miR-M23-1-5p | 6 | __...... | 1 | 75 |
| MIMAT0005313 | rno-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0005211 | ppt-miR1079-5p | 2 | __...... | 7 | 75 |
| MIMAT0004273 | ath-miR851-5p | 7 | __...... | 2 | 75 |
| MIMAT0003676 | xtr-miR-29c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0003454 | mmu-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0003452 | mmu-miR-678 | 8 | __...... | 3 | 75 |
| MIMAT0001582 | hcmv-miR-US25-2-5p | 8 | ......__ | 3 | 75 |
| MIMAT0001340 | hsa-miR-423-3p | 8 | __...... | 3 | 75 |
| MIMAT0003154 | rno-miR-29c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0004673 | hsa-miR-29c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0000588 | mmu-miR-341-3p | 6 | _......_ | 1 | 75 |
| MIMAT0000587 | rno-miR-341 | 6 | _......_ | 1 | 75 |
| MIMAT0004632 | mmu-miR-29c-5p | 2 | _......_ | 7 | 75 |
| MIMAT0020818 | dme-miR-100-3p | 3 | ......__ | 8 | 75 |
