| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | miRNA | Start | Alignment | End | % Identity |
| Query | 1 | agaggca | 7 | ||
| MIMAT0036809 | oha-miR-202-3p | 1 | ....... | 7 | 100 |
| MIMAT0036081 | chi-miR-2290 | 8 | ....... | 2 | 100 |
| MIMAT0034376 | cfa-miR-8876 | 8 | ....... | 2 | 100 |
| MIMAT0034367 | cfa-miR-8870 | 7 | ....... | 1 | 100 |
| MIMAT0027827 | mmu-miR-6963-3p | 7 | ....... | 1 | 100 |
| MIMAT0027463 | hsa-miR-6781-3p | 7 | ....... | 1 | 100 |
| MIMAT0025666 | gga-miR-6579-3p | 1 | ....... | 7 | 100 |
| MIMAT0021850 | aca-miR-202-3p.1 | 1 | ....... | 7 | 100 |
| MIMAT0005252 | smo-miR1096 | 8 | ....... | 2 | 100 |
| MIMAT0003355 | gga-miR-202-3p | 1 | ....... | 7 | 100 |
| MIMAT0003074 | tni-miR-202 | 1 | ....... | 7 | 100 |
| MIMAT0003073 | fru-miR-202 | 1 | ....... | 7 | 100 |
| MIMAT0001864 | dre-miR-202-3p | 1 | ....... | 7 | 100 |
| MIMAT0036897 | oha-miR-31-5p | 2 | _...... | 7 | 85 |
| MIMAT0036244 | chi-miR-485-5p | 1 | ......_ | 6 | 85 |
| MIMAT0035830 | bra-miR162-5p | 2 | _...... | 7 | 85 |
| MIMAT0035070 | efu-miR-9329 | 8 | _...... | 3 | 85 |
| MIMAT0034033 | gra-miR8663b | 2 | _...... | 7 | 85 |
| MIMAT0033946 | atr-miR477 | 1 | ......_ | 6 | 85 |
| MIMAT0032969 | ppc-miR-8251-3p | 6 | _...... | 1 | 85 |
| MIMAT0032482 | ssa-miR-202-5p | 3 | ......_ | 8 | 85 |
| MIMAT0031281 | stu-miR162b-5p | 2 | _...... | 7 | 85 |
| MIMAT0031279 | stu-miR162a-5p | 2 | _...... | 7 | 85 |
| MIMAT0029908 | mmu-miR-7689-5p | 3 | _...... | 8 | 85 |
| MIMAT0029123 | hcmv-miR-UL69 | 3 | ......_ | 8 | 85 |
| MIMAT0028823 | mdo-miR-7383-3p | 1 | ......_ | 6 | 85 |
| MIMAT0028820 | mdo-miR-7382-5p | 1 | ......_ | 6 | 85 |
| MIMAT0028694 | mdo-miR-7342-5p | 8 | _...... | 3 | 85 |
| MIMAT0028492 | mdo-miR-7263-5p | 1 | _...... | 6 | 85 |
| MIMAT0028305 | mml-miR-7180-3p | 8 | ......_ | 3 | 85 |
| MIMAT0028282 | mml-miR-7172-5p | 8 | ......_ | 3 | 85 |
| MIMAT0028178 | dev-miR-D8-5p | 6 | _...... | 1 | 85 |
| MIMAT0028075 | mmu-miR-7084-3p | 6 | ......_ | 1 | 85 |
| MIMAT0028032 | mmu-miR-7064-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027971 | mmu-miR-7033-3p | 6 | _...... | 1 | 85 |
| MIMAT0027850 | mmu-miR-6974-5p | 3 | _...... | 8 | 85 |
| MIMAT0027668 | hsa-miR-6884-5p | 1 | ......_ | 6 | 85 |
| MIMAT0027655 | hsa-miR-6877-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027632 | hsa-miR-6866-5p | 3 | ......_ | 8 | 85 |
| MIMAT0027575 | hsa-miR-6836-3p | 7 | _...... | 2 | 85 |
| MIMAT0027559 | hsa-miR-6829-3p | 6 | _...... | 1 | 85 |
| MIMAT0027539 | hsa-miR-6819-3p | 8 | ......_ | 3 | 85 |
| MIMAT0027483 | hsa-miR-6791-3p | 6 | _...... | 1 | 85 |
| MIMAT0027457 | hsa-miR-6778-3p | 6 | _...... | 1 | 85 |
| MIMAT0027390 | hsa-miR-6744-3p | 8 | ......_ | 3 | 85 |
| MIMAT0025714 | gga-miR-6618-5p | 1 | ......_ | 6 | 85 |
| MIMAT0025654 | gga-miR-6573-3p | 2 | _...... | 7 | 85 |
| MIMAT0025140 | mmu-miR-6391 | 2 | _...... | 7 | 85 |
| MIMAT0024968 | hme-miR-282 | 8 | ......_ | 3 | 85 |
| MIMAT0027329 | ppe-miR6293 | 3 | ......_ | 8 | 85 |
| MIMAT0024444 | mse-miR-282 | 8 | ......_ | 3 | 85 |
| MIMAT0024401 | ppy-miR-3188 | 1 | ......_ | 6 | 85 |
| MIMAT0024385 | ppy-miR-1273e | 1 | _...... | 6 | 85 |
| MIMAT0024258 | ggo-miR-3612 | 3 | _...... | 8 | 85 |
| MIMAT0024102 | ggo-miR-485 | 1 | ......_ | 6 | 85 |
| MIMAT0023672 | ame-miR-6048 | 1 | ......_ | 6 | 85 |
| MIMAT0023576 | tca-miR-6017-3p | 6 | ......_ | 1 | 85 |
| MIMAT0022367 | mmu-miR-5620-5p | 3 | _...... | 8 | 85 |
| MIMAT0021059 | gma-miR5036 | 1 | ......_ | 6 | 85 |
| MIMAT0019901 | hsa-miR-4757-5p | 8 | ......_ | 3 | 85 |
| MIMAT0019312 | oar-miR-485-5p | 1 | ......_ | 6 | 85 |
| MIMAT0018915 | smr-miR-282 | 8 | ......_ | 3 | 85 |
| MIMAT0018832 | tca-miR-3870-5p | 3 | _...... | 8 | 85 |
| MIMAT0017989 | hsa-miR-3612 | 3 | _...... | 8 | 85 |
| MIMAT0016236 | ppy-miR-1827 | 2 | _...... | 7 | 85 |
| MIMAT0016083 | ppy-miR-650 | 3 | _...... | 8 | 85 |
| MIMAT0015902 | ppy-miR-485-5p | 1 | ......_ | 6 | 85 |
| MIMAT0017447 | aly-miR162b-5p | 2 | _...... | 7 | 85 |
| MIMAT0017445 | aly-miR162a-5p | 2 | _...... | 7 | 85 |
| MIMAT0015576 | bmo-miR-3382-3p | 6 | _...... | 1 | 85 |
| MIMAT0015458 | bmo-miR-3273 | 6 | _...... | 1 | 85 |
| MIMAT0015070 | hsa-miR-3188 | 1 | ......_ | 6 | 85 |
| MIMAT0015063 | hsa-miR-3183 | 6 | ......_ | 1 | 85 |
| MIMAT0019207 | hsa-miR-3152-5p | 8 | _...... | 3 | 85 |
| MIMAT0017388 | csi-miR162-5p | 3 | _...... | 8 | 85 |
| MIMAT0016943 | rlcv-miR-rL1-21-3p | 8 | ......_ | 3 | 85 |
| MIMAT0013782 | bmo-miR-306b | 2 | _...... | 7 | 85 |
| MIMAT0013159 | eca-miR-485-5p | 1 | ......_ | 6 | 85 |
| MIMAT0013496 | mtr-miR2675 | 2 | _...... | 7 | 85 |
| MIMAT0011798 | bta-miR-2290 | 6 | ......_ | 1 | 85 |
| MIMAT0009435 | mmu-miR-1962 | 1 | ......_ | 6 | 85 |
| MIMAT0009328 | bta-miR-485 | 1 | ......_ | 6 | 85 |
| MIMAT0008386 | tca-miR-282-5p | 8 | ......_ | 3 | 85 |
| MIMAT0008301 | ptr-miR-650 | 3 | _...... | 8 | 85 |
| MIMAT0008052 | ptr-miR-1827 | 2 | _...... | 7 | 85 |
| MIMAT0026917 | hsa-miR-1910-3p | 1 | _...... | 6 | 85 |
| MIMAT0006767 | hsa-miR-1827 | 2 | _...... | 7 | 85 |
| MIMAT0006725 | cfa-miR-485 | 1 | ......_ | 6 | 85 |
| MIMAT0006490 | mml-miR-650c | 3 | _...... | 8 | 85 |
| MIMAT0006489 | mml-miR-650b | 3 | _...... | 8 | 85 |
| MIMAT0006488 | mml-miR-650a | 3 | _...... | 8 | 85 |
| MIMAT0006342 | mml-miR-485-5p | 1 | ......_ | 6 | 85 |
| MIMAT0026808 | mml-miR-33b-3p | 7 | _...... | 2 | 85 |
| MIMAT0007684 | gga-miR-1773-3p | 3 | ......_ | 8 | 85 |
| MIMAT0007664 | gga-miR-1757 | 3 | ......_ | 8 | 85 |
| MIMAT0007595 | gga-miR-1703-5p | 1 | ......_ | 6 | 85 |
| MIMAT0007517 | gga-miR-1642 | 3 | ......_ | 8 | 85 |
| MIMAT0007484 | gga-miR-1617 | 1 | ......_ | 6 | 85 |
| MIMAT0007451 | gga-miR-1589 | 8 | ......_ | 3 | 85 |
| MIMAT0005287 | rno-miR-879-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004842 | mmu-miR-879-5p | 1 | ......_ | 6 | 85 |
| MIMAT0004094 | mdo-miR-31-5p | 2 | _...... | 7 | 85 |
| MIMAT0003499 | mmu-miR-709 | 2 | _...... | 7 | 85 |
| MIMAT0003320 | hsa-miR-650 | 3 | _...... | 8 | 85 |
| MIMAT0003203 | rno-miR-485-5p | 1 | ......_ | 6 | 85 |
| MIMAT0003128 | mmu-miR-485-5p | 1 | ......_ | 6 | 85 |
| MIMAT0002175 | hsa-miR-485-5p | 1 | ......_ | 6 | 85 |
| MIMAT0000346 | dme-miR-282-5p | 8 | ......_ | 3 | 85 |
| MIMAT0031877 | ath-miR162b-5p | 3 | _...... | 8 | 85 |
| MIMAT0031876 | ath-miR162a-5p | 3 | _...... | 8 | 85 |
